Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R6Y88_RS11015 Genome accession   NZ_CP137687
Coordinates   2168859..2169377 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain YT-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2163859..2174377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS10995 yyzM 2164933..2165139 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  R6Y88_RS11000 yyaE 2165190..2167193 (+) 2004 WP_015385219.1 molybdopterin-dependent oxidoreductase -
  R6Y88_RS11005 ychF 2167320..2168420 (+) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  R6Y88_RS11010 rpsF 2168531..2168818 (+) 288 WP_003236622.1 30S ribosomal protein S6 -
  R6Y88_RS11015 ssbA 2168859..2169377 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  R6Y88_RS11020 rpsR 2169421..2169660 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  R6Y88_RS11025 xth 2169725..2170483 (+) 759 WP_015385216.1 exodeoxyribonuclease III -
  R6Y88_RS11030 ccpB 2170542..2171474 (+) 933 WP_015385215.1 transcriptional regulator CcpB -
  R6Y88_RS11035 yyaH 2171530..2171910 (+) 381 WP_015483980.1 VOC family protein -
  R6Y88_RS11040 maa 2171926..2172480 (+) 555 WP_015385213.1 sugar O-acetyltransferase -
  R6Y88_RS11045 yyaJ 2172514..2173869 (-) 1356 WP_015483979.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=899731 R6Y88_RS11015 WP_003219228.1 2168859..2169377(+) (ssbA) [Bacillus subtilis strain YT-4]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=899731 R6Y88_RS11015 WP_003219228.1 2168859..2169377(+) (ssbA) [Bacillus subtilis strain YT-4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAACGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378