Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R4Z10_RS21030 Genome accession   NZ_CP137636
Coordinates   4191649..4192173 (-) Length   174 a.a.
NCBI ID   WP_338471217.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4186649..4197173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS21010 (R4Z10_21000) rplI 4187849..4188295 (-) 447 WP_338471214.1 50S ribosomal protein L9 -
  R4Z10_RS21015 (R4Z10_21005) - 4188292..4190265 (-) 1974 WP_338471215.1 DHH family phosphoesterase -
  R4Z10_RS21020 (R4Z10_21010) - 4190293..4191234 (-) 942 WP_338471216.1 YybS family protein -
  R4Z10_RS21025 (R4Z10_21015) rpsR 4191357..4191593 (-) 237 WP_338473299.1 30S ribosomal protein S18 -
  R4Z10_RS21030 (R4Z10_21020) ssbA 4191649..4192173 (-) 525 WP_338471217.1 single-stranded DNA-binding protein Machinery gene
  R4Z10_RS21035 (R4Z10_21025) rpsF 4192247..4192534 (-) 288 WP_338471218.1 30S ribosomal protein S6 -
  R4Z10_RS21040 (R4Z10_21030) ychF 4192673..4193773 (-) 1101 WP_338471219.1 redox-regulated ATPase YchF -
  R4Z10_RS21045 (R4Z10_21035) - 4194112..4194309 (-) 198 WP_338471220.1 DUF951 domain-containing protein -
  R4Z10_RS21050 (R4Z10_21040) yyaC 4194689..4195327 (+) 639 WP_338471221.1 spore protease YyaC -
  R4Z10_RS21055 (R4Z10_21045) - 4195373..4196083 (-) 711 WP_338471222.1 DUF554 domain-containing protein -
  R4Z10_RS21060 (R4Z10_21050) - 4196184..4197047 (-) 864 WP_338471223.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19170.11 Da        Isoelectric Point: 4.9815

>NTDB_id=899638 R4Z10_RS21030 WP_338471217.1 4191649..4192173(-) (ssbA) [Niallia sp. XMNu-256]
MINRVILVGRLTRDPELRYTPNGVAVATFSLAVNRPFSNQQGEREADFINCVVWRKQAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVVAESVQFLEPKGSSGGRGDYAASFGGAPQAAPQQAPFGKNYQNQPQSPNRNNNQGYTRLDEDPFA
NDGQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=899638 R4Z10_RS21030 WP_338471217.1 4191649..4192173(-) (ssbA) [Niallia sp. XMNu-256]
ATGATCAATCGAGTGATTTTAGTTGGTCGTTTAACAAGGGATCCTGAACTACGCTATACTCCAAACGGAGTAGCCGTCGC
TACCTTTTCGTTGGCTGTGAATCGTCCATTTTCTAATCAACAAGGTGAACGTGAAGCTGACTTTATAAATTGCGTAGTTT
GGAGAAAACAAGCAGAAAATGTCGCAAACTTTCTTAAAAAGGGAAGTCTTGCTGGTGTTGATGGTCGGATTCAAACACGT
AATTATGAGGGACAAGATGGGAAGCGTGTCTATGTGACAGAGGTTGTAGCGGAAAGTGTTCAATTCCTTGAACCTAAAGG
TAGTTCAGGTGGAAGAGGCGATTATGCAGCTTCTTTTGGTGGAGCTCCACAAGCAGCACCACAACAAGCACCTTTTGGAA
AAAACTATCAGAATCAACCACAGAGTCCGAATCGAAATAATAACCAAGGCTATACTCGTCTAGATGAGGATCCATTTGCC
AACGATGGCCAAATTGATATCTCTGACGACGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.922

100

0.678
  ssb Latilactobacillus sakei subsp. sakei 23K

59.887

100

0.609
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.92

0.379
  ssb Glaesserella parasuis strain SC1401

34.783

100

0.368