Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2E40_RS21000 Genome accession   NZ_CP137631
Coordinates   4494610..4495188 (+) Length   192 a.a.
NCBI ID   WP_318164309.1    Uniprot ID   -
Organism   Aeromonas sp. CD     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4489610..4500188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2E40_RS20990 (R2E40_20990) uvrA 4490503..4493331 (-) 2829 WP_318164308.1 excinuclease ABC subunit UvrA -
  R2E40_RS20995 (R2E40_20995) - 4493427..4494086 (-) 660 WP_318165578.1 LuxR C-terminal-related transcriptional regulator -
  R2E40_RS21000 (R2E40_21000) ssb 4494610..4495188 (+) 579 WP_318164309.1 single-stranded DNA-binding protein Machinery gene
  R2E40_RS21005 (R2E40_21005) - 4495356..4496114 (+) 759 WP_318164310.1 substrate-binding periplasmic protein -
  R2E40_RS21010 (R2E40_21010) - 4496195..4496317 (-) 123 WP_011707641.1 hypothetical protein -
  R2E40_RS21015 (R2E40_21015) - 4496771..4497649 (+) 879 WP_318164311.1 cation diffusion facilitator family transporter -
  R2E40_RS21020 (R2E40_21020) - 4497799..4498083 (+) 285 WP_318165579.1 DUF3811 domain-containing protein -
  R2E40_RS21025 (R2E40_21025) cspA 4498482..4498694 (+) 213 WP_011707644.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21143.53 Da        Isoelectric Point: 5.9247

>NTDB_id=899565 R2E40_RS21000 WP_318164309.1 4494610..4495188(+) (ssb) [Aeromonas sp. CD]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGGAGQGMGGQSQGNWGQQQGMQSQQPINQARPAQAPQQNMQ
QQGGYARPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=899565 R2E40_RS21000 WP_318164309.1 4494610..4495188(+) (ssb) [Aeromonas sp. CD]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTCTATGTT
GAAGGCAAGCTGCAGACCCGTAAGTGGCAGGATCAAAGCGGCCAGGAGCGTTACACCACCGAAGTGCTGGTCGATGGCTT
CAGCGGCGTGATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCCGGCCAGGGCATGGGTGGCCAGTCTCAGGGCAACT
GGGGTCAGCAGCAGGGCATGCAGTCCCAGCAGCCGATTAACCAGGCGCGTCCTGCCCAGGCTCCACAGCAGAACATGCAG
CAACAGGGCGGCTATGCTCGTCCGGCCCAACAGCCGCAGTCTGCACCGCCGGTGTACAATGAGCCGCCGATGGACTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.172

100

0.693
  ssb Glaesserella parasuis strain SC1401

53.684

98.958

0.531
  ssb Neisseria meningitidis MC58

47.917

100

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474