Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2B70_RS01660 Genome accession   NZ_CP137630
Coordinates   364889..365458 (-) Length   189 a.a.
NCBI ID   WP_042078675.1    Uniprot ID   -
Organism   Aeromonas sp. XH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 359889..370458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B70_RS01630 (R2B70_01630) - 360320..361042 (+) 723 WP_010675899.1 response regulator -
  R2B70_RS01635 (R2B70_01635) - 361050..362435 (+) 1386 WP_318162479.1 ATP-binding protein -
  R2B70_RS01640 (R2B70_01640) cspA 362616..362828 (-) 213 WP_042078672.1 RNA chaperone/antiterminator CspA -
  R2B70_RS01645 (R2B70_01645) yjbD 363221..363505 (-) 285 WP_318162480.1 DUF3811 domain-containing protein -
  R2B70_RS01650 (R2B70_01650) - 363791..363913 (+) 123 WP_010675895.1 hypothetical protein -
  R2B70_RS01655 (R2B70_01655) - 363960..364730 (-) 771 WP_318162481.1 substrate-binding periplasmic protein -
  R2B70_RS01660 (R2B70_01660) ssb 364889..365458 (-) 570 WP_042078675.1 single-stranded DNA-binding protein Machinery gene
  R2B70_RS01665 (R2B70_01665) - 365977..366615 (+) 639 WP_209795023.1 LuxR C-terminal-related transcriptional regulator -
  R2B70_RS01670 (R2B70_01670) uvrA 366708..369536 (+) 2829 WP_318162482.1 excinuclease ABC subunit UvrA -
  R2B70_RS01675 (R2B70_01675) - 369633..369758 (-) 126 WP_005328766.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20809.19 Da        Isoelectric Point: 6.4802

>NTDB_id=899515 R2B70_RS01660 WP_042078675.1 364889..365458(-) (ssb) [Aeromonas sp. XH]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGAGQGMGGQSSQGNWGQPQQAAPQQSMHRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=899515 R2B70_RS01660 WP_042078675.1 364889..365458(-) (ssb) [Aeromonas sp. XH]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGGACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTCGCCGGCGAATACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAAAGCGGCCAGGAGCGCTACACCACCGAAGTGCTGGTAGACAGCTT
CACCGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAGGGCGCCGGCCAGGGCATGGGGGGTCAGTCGTCCCAGGGCAACT
GGGGTCAACCGCAACAGGCTGCGCCGCAGCAGAGCATGCACCGCCCTGCCGCCCCGCAGCAGAACATGCAGCCCCAGGGG
GGCTACGGTCGTCCGGCCCAGCAACCGCAATCCGCACCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGACAT
CCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.394

100

0.698
  ssb Glaesserella parasuis strain SC1401

53.476

98.942

0.529
  ssb Neisseria gonorrhoeae MS11

47.312

98.413

0.466
  ssb Neisseria meningitidis MC58

46.237

98.413

0.455