Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R6U80_RS09385 Genome accession   NZ_CP137623
Coordinates   1929472..1930461 (-) Length   329 a.a.
NCBI ID   WP_012898311.1    Uniprot ID   A0A0A7T187
Organism   Lactococcus lactis strain NCK401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1924472..1935461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS09370 (R6U80_09370) - 1925838..1926764 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  R6U80_RS09375 (R6U80_09375) - 1926918..1927601 (-) 684 WP_010906108.1 O-methyltransferase -
  R6U80_RS09380 (R6U80_09380) pepF 1927604..1929409 (-) 1806 WP_058223220.1 oligoendopeptidase F Regulator
  R6U80_RS09385 (R6U80_09385) coiA 1929472..1930461 (-) 990 WP_012898311.1 competence protein CoiA Machinery gene
  R6U80_RS09390 (R6U80_09390) - 1930535..1931620 (-) 1086 WP_012898312.1 YdcF family protein -
  R6U80_RS09395 (R6U80_09395) - 1931782..1932630 (-) 849 WP_313791939.1 alpha/beta hydrolase -
  R6U80_RS09400 (R6U80_09400) - 1932822..1934243 (-) 1422 WP_012898314.1 NCS2 family permease -
  R6U80_RS09405 (R6U80_09405) - 1934550..1935386 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39384.91 Da        Isoelectric Point: 8.5207

>NTDB_id=899405 R6U80_RS09385 WP_012898311.1 1929472..1930461(-) (coiA) [Lactococcus lactis strain NCK401]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMTHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSTKRLKERTENYQVHGFTVLWLMGQDLWLKEQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRQQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=899405 R6U80_RS09385 WP_012898311.1 1929472..1930461(-) (coiA) [Lactococcus lactis strain NCK401]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGACTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTACGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGAGCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCAGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TTTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7T187

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.767

99.088

0.751
  coiA Streptococcus pneumoniae TIGR4

44.41

97.872

0.435
  coiA Streptococcus pneumoniae Rx1

44.41

97.872

0.435
  coiA Streptococcus pneumoniae D39

44.41

97.872

0.435
  coiA Streptococcus pneumoniae R6

44.41

97.872

0.435
  coiA Streptococcus mitis NCTC 12261

44.41

97.872

0.435