Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5W60_RS06395 Genome accession   NZ_CP137604
Coordinates   1238314..1238823 (+) Length   169 a.a.
NCBI ID   WP_121983129.1    Uniprot ID   -
Organism   Brucella pseudintermedia strain Ops-OCH-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1233314..1243823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5W60_RS06370 (R5W60_06330) - 1233554..1233829 (+) 276 WP_006470422.1 HU family DNA-binding protein -
  R5W60_RS06375 (R5W60_06335) - 1234009..1234350 (+) 342 WP_144897176.1 hypothetical protein -
  R5W60_RS06380 (R5W60_06340) uvrA 1234405..1237329 (-) 2925 WP_121983258.1 excinuclease ABC subunit UvrA -
  R5W60_RS06385 (R5W60_06345) - 1237445..1237656 (-) 212 Protein_1256 hypothetical protein -
  R5W60_RS06390 (R5W60_06350) - 1238032..1238241 (-) 210 WP_121983128.1 hypothetical protein -
  R5W60_RS06395 (R5W60_06355) ssb 1238314..1238823 (+) 510 WP_121983129.1 single-stranded DNA-binding protein Machinery gene
  R5W60_RS06400 (R5W60_06360) - 1239100..1239825 (-) 726 WP_208851912.1 class I SAM-dependent methyltransferase -
  R5W60_RS06405 - 1239994..1240124 (+) 131 Protein_1260 DUF4158 domain-containing protein -
  R5W60_RS06410 (R5W60_06365) arsC 1240233..1240631 (-) 399 WP_121983131.1 arsenate reductase (glutaredoxin) -
  R5W60_RS06415 (R5W60_06370) phnF 1240675..1241424 (-) 750 WP_121983260.1 phosphonate metabolism transcriptional regulator PhnF -
  R5W60_RS06420 (R5W60_06375) phnG 1241555..1242082 (+) 528 WP_121983132.1 phosphonate C-P lyase system protein PhnG -
  R5W60_RS06425 (R5W60_06380) phnH 1242082..1242693 (+) 612 WP_376903207.1 phosphonate C-P lyase system protein PhnH -
  R5W60_RS06430 (R5W60_06385) - 1242696..1243805 (+) 1110 WP_121983134.1 carbon-phosphorus lyase complex subunit PhnI -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18322.07 Da        Isoelectric Point: 5.3476

>NTDB_id=899272 R5W60_RS06395 WP_121983129.1 1238314..1238823(+) (ssb) [Brucella pseudintermedia strain Ops-OCH-23]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGNRNQMSDYSGGGDFGSSGPSSGGSGGGFS
RDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=899272 R5W60_RS06395 WP_121983129.1 1238314..1238823(+) (ssb) [Brucella pseudintermedia strain Ops-OCH-23]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCGGAAATCCGTCGCCTGAACTCGGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCGGAAAGCTGGCGCGACCGTCAGACCGGCGAACGCAAGGACCGCACTGAAT
GGCACAGCGTCGTCATTTTCAACGAGAACCTTGCCAAGGTCGCGGAGCAGTATCTGAAGAAGGGCGCTAAGGTTTATATC
GAAGGCGCGCTCCAGACTCGCAAATGGCAGGATCAGAACGGCAATGACCGTTACTCGACGGAAGTTGTGCTGCAGAAGTT
CCGCGGCGAGTTGCAGATGCTCGACAGCCGCGGCGAAGGCGGCGGTGAGGGCCGTTCGTTCGGCGGAGGCGGCAACCGCA
ACCAGATGTCGGATTACTCCGGCGGCGGTGATTTTGGCTCGTCCGGTCCATCTTCGGGCGGCAGCGGCGGCGGTTTCTCG
CGTGATCTGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.538
  ssb Vibrio cholerae strain A1552

49.711

100

0.509
  ssb Neisseria meningitidis MC58

37.43

100

0.396
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.391