Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   R5H38_RS03180 Genome accession   NZ_CP137602
Coordinates   612438..614675 (+) Length   745 a.a.
NCBI ID   WP_318150846.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607438..619675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS03150 - 608709..609115 (+) 407 Protein_582 GNAT family N-acetyltransferase -
  R5H38_RS03155 - 609236..609847 (+) 612 WP_277836757.1 FMN-dependent NADH-azoreductase -
  R5H38_RS03160 - 609865..610137 (-) 273 WP_318150845.1 GIY-YIG nuclease family protein -
  R5H38_RS03165 - 610127..610876 (-) 750 WP_130554335.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  R5H38_RS03170 - 610968..611711 (+) 744 WP_217374832.1 lysophospholipid acyltransferase family protein -
  R5H38_RS03175 - 611777..612454 (+) 678 WP_274504678.1 helix-hairpin-helix domain-containing protein -
  R5H38_RS03180 comEC/celB 612438..614675 (+) 2238 WP_318150846.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R5H38_RS03185 holA 614739..615770 (+) 1032 WP_318150847.1 DNA polymerase III subunit delta -
  R5H38_RS03190 sodA 615847..616452 (+) 606 WP_217374836.1 superoxide dismutase -
  R5H38_RS03195 rplS 616654..617001 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  R5H38_RS03200 - 617274..619013 (+) 1740 WP_318150848.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84507.79 Da        Isoelectric Point: 6.9943

>NTDB_id=899231 R5H38_RS03180 WP_318150846.1 612438..614675(+) (comEC/celB) [Streptococcus parasuis strain 221006]
MSRLIRLPCQPIHFAVLAVLAYFAVHSFSLLTMSLLSLLLAVFRLRQGKVVFIRTLPLLALCGLFFGCQKIQWERTNQWA
PEQVTTVQVIPDTIDVNGDSLSFRGRAEGQVFQVFYKVASQEEQTYFHELTDLVQLEVDAEVCQPAGQRNFNGFDYQAYL
KTQGIYRTVKISTINNILPVHSWNIFDWLSTWRRQALVYIKSHFPAPMSHYMTGLLLGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWLLLRLGLTKETVDKLQIPFSLIYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAATVFVCLLLM
PRFLLTAGGVLTFTYALLLTVFDFEELGQLKKIAVESLSISIGILPVLMTYFFAFQPLSILLTFVFSFVFDVLLLPGLSV
ILLLSPFIKITWVNGFFILMEKIIVWVAELGIRPWILGKPTGLVFLLLLFCLFLLYDFHREKKWLLGLSLILVLLFFITK
HPLENEVTVVDVGQGDSIFLRDIRGRTVLIDVGGRVDFAAKEAWRERAREANAERTLIPYLHSRGVDRIDDLVLTHTDAD
HVGDVLELAKQIQIGKIYVSPGSLTVPDFVATLRRINVPVHVVNPGDRLPIFDSYLEVLYPNRIGDGGNNDSIVLYGRLL
KMNFLFTGDLEQGELDLITSYPQLPVDVLKAGHHGSKGSSYPEFLDHIGAKIALISAGEDNRYQHPHKETLERLDSQNMQ
VYRTDLQGAIRFRGWKQWSIETVKE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=899231 R5H38_RS03180 WP_318150846.1 612438..614675(+) (comEC/celB) [Streptococcus parasuis strain 221006]
ATGTCACGGTTGATTAGACTCCCCTGTCAGCCCATTCACTTTGCAGTTTTGGCGGTGTTAGCCTACTTTGCCGTTCACTC
TTTTTCCCTTTTGACAATGAGCCTGCTGAGTCTGTTACTAGCAGTCTTTAGGCTTCGGCAAGGAAAGGTGGTCTTCATCA
GAACGCTACCGCTTTTAGCCTTATGTGGTCTCTTCTTCGGATGTCAGAAGATACAATGGGAGCGGACAAATCAATGGGCT
CCAGAGCAAGTGACAACTGTGCAGGTTATTCCTGATACCATTGATGTCAACGGAGACAGTCTATCTTTTCGTGGTCGGGC
TGAAGGTCAAGTTTTTCAGGTTTTCTATAAAGTTGCAAGTCAGGAAGAACAAACCTACTTTCATGAGCTTACGGACTTGG
TGCAGTTAGAGGTAGATGCAGAAGTTTGCCAACCAGCAGGTCAACGTAATTTCAATGGTTTTGATTATCAGGCTTATCTC
AAAACCCAGGGCATCTATCGGACAGTAAAAATAAGTACCATTAACAATATTCTACCTGTTCATTCTTGGAATATCTTTGA
CTGGTTGTCAACCTGGCGGAGGCAGGCTCTCGTTTATATCAAATCTCATTTTCCTGCTCCCATGAGCCACTACATGACTG
GATTACTATTGGGAGAGTTAGATAGTGACTTTGACCAAATGAGTGATCTCTATTCTAGTTTAGGGATCATTCATCTTTTT
GCCCTGTCTGGGATGCAGGTTGGTTTTTTCATTGACAAATTTCGCTGGCTTTTATTGCGTTTGGGTTTAACAAAGGAAAC
TGTCGATAAACTTCAAATTCCGTTTTCTCTTATTTATGCAGGATTAACAGGATTTTCAGTATCAGTCGTGCGGTCCTTGG
TCCAGAAAATTCTTGGTAATCTCGGGCTACGAAAATTGGATAATTTTGCAGCAACTGTCTTTGTTTGTCTCTTGCTTATG
CCACGTTTTCTTCTGACAGCAGGAGGTGTGCTGACATTTACCTATGCTTTGTTATTGACAGTCTTTGATTTTGAAGAGTT
AGGGCAGCTAAAAAAGATAGCAGTGGAGAGTCTGAGTATTTCTATTGGGATTTTACCGGTCTTGATGACCTATTTTTTTG
CCTTTCAGCCCTTATCTATCCTTTTAACGTTTGTTTTTTCCTTTGTTTTTGATGTGTTGTTGTTACCTGGGCTATCTGTC
ATTCTTTTACTATCGCCCTTCATTAAAATTACGTGGGTCAACGGATTCTTTATCCTTATGGAAAAGATTATTGTTTGGGT
GGCAGAATTGGGGATTCGACCTTGGATTTTAGGAAAACCTACGGGCCTTGTCTTTTTGCTCTTGCTGTTCTGCCTTTTCT
TGCTTTATGATTTTCACAGAGAGAAGAAATGGCTCCTTGGATTGAGTCTGATCCTTGTTCTGCTATTTTTCATAACCAAA
CACCCGCTGGAAAATGAGGTGACGGTGGTAGACGTAGGGCAGGGGGATAGTATCTTTTTGCGGGACATTCGGGGGCGGAC
GGTTCTGATTGATGTGGGTGGTCGGGTTGACTTTGCTGCAAAGGAAGCTTGGCGGGAGCGGGCTAGGGAAGCAAATGCGG
AGCGAACACTGATTCCTTACCTGCATAGTCGAGGTGTGGATCGGATTGATGATTTGGTTCTGACCCATACCGATGCAGAT
CATGTGGGTGATGTGCTAGAATTGGCTAAGCAGATTCAAATAGGTAAGATTTACGTTTCTCCAGGTAGTTTGACTGTACC
AGATTTTGTTGCGACTTTGAGGAGAATAAATGTCCCTGTTCATGTTGTAAATCCTGGAGATCGATTGCCCATTTTTGATT
CCTATCTAGAAGTTCTATATCCCAATAGAATCGGAGATGGAGGCAATAATGACTCAATTGTACTCTATGGTCGTTTGTTA
AAAATGAATTTTCTCTTTACCGGTGACTTGGAGCAAGGGGAATTAGATTTAATCACTTCTTATCCGCAGCTACCAGTCGA
TGTGCTGAAAGCAGGTCACCATGGTTCCAAGGGCTCTTCATATCCAGAATTTTTAGACCATATTGGAGCAAAAATTGCTC
TGATTTCTGCTGGTGAAGATAATCGCTATCAACATCCACATAAGGAAACTCTGGAACGTCTTGACAGTCAAAATATGCAG
GTTTACCGAACGGATCTGCAAGGAGCAATCCGTTTCCGAGGTTGGAAACAGTGGAGTATTGAAACGGTAAAAGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-176)

Competence protein (Competence)

(215-458)

Metallo-beta-lactamase superfamily (Lactamase_B)

(491-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

53.815

100

0.54
  comEC/celB Streptococcus mitis NCTC 12261

52.561

99.597

0.523
  comEC/celB Streptococcus pneumoniae TIGR4

51.817

99.732

0.517
  comEC/celB Streptococcus pneumoniae Rx1

51.279

99.732

0.511
  comEC/celB Streptococcus pneumoniae D39

51.279

99.732

0.511
  comEC/celB Streptococcus pneumoniae R6

51.279

99.732

0.511
  comEC Lactococcus lactis subsp. cremoris KW2

47.13

100

0.474