Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5R33_RS06150 Genome accession   NZ_CP137555
Coordinates   1371828..1372406 (-) Length   192 a.a.
NCBI ID   WP_318955161.1    Uniprot ID   A0AAU0N357
Organism   Microbulbifer pacificus strain SPO729     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1366828..1377406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R33_RS06130 (R5R33_06130) galU 1367933..1368769 (-) 837 WP_318955157.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  R5R33_RS06135 (R5R33_06135) fabA 1369042..1369566 (+) 525 WP_318955158.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  R5R33_RS06140 (R5R33_06140) fabB 1369627..1370850 (+) 1224 WP_318955159.1 beta-ketoacyl-ACP synthase I -
  R5R33_RS06145 (R5R33_06145) - 1370938..1371810 (-) 873 WP_318955160.1 sugar nucleotide-binding protein -
  R5R33_RS06150 (R5R33_06150) ssb 1371828..1372406 (-) 579 WP_318955161.1 single-stranded DNA-binding protein Machinery gene
  R5R33_RS06155 (R5R33_06155) - 1372606..1373778 (-) 1173 WP_318955162.1 MFS transporter -
  R5R33_RS06160 (R5R33_06160) - 1373906..1375309 (-) 1404 WP_318955706.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21069.89 Da        Isoelectric Point: 5.2882

>NTDB_id=899037 R5R33_RS06150 WP_318955161.1 1371828..1372406(-) (ssb) [Microbulbifer pacificus strain SPO729]
MARGVNKVILIGNLGGDPETRYLPSGGAVTNVTLATSETWKDKQTGQNQERTEWHRVVFFNRLAEIAGEYLRKGSKVYLE
GSLRTRKWQDKQSGQDRYTTEIVASEMQMLDGRGEQGGGYQQGGQGGGYQQQDGGYNQGGYQDEYAQGRSAPSPMAPSNH
SNQSQGQPQNRPANNPAPMGGFDNSFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=899037 R5R33_RS06150 WP_318955161.1 1371828..1372406(-) (ssb) [Microbulbifer pacificus strain SPO729]
ATGGCCAGGGGCGTTAACAAAGTAATTCTGATTGGCAATCTGGGCGGCGACCCGGAAACCCGCTACCTGCCCAGCGGCGG
TGCCGTCACCAATGTGACCCTGGCGACCTCCGAGACCTGGAAAGACAAGCAGACCGGTCAAAACCAGGAGCGCACCGAGT
GGCACCGCGTGGTGTTCTTCAACCGTCTGGCGGAAATTGCCGGCGAGTACCTGCGCAAGGGTAGCAAGGTCTATCTGGAA
GGCTCCCTGCGCACCCGCAAGTGGCAGGACAAGCAATCTGGCCAGGACCGCTACACCACCGAGATCGTCGCCAGTGAAAT
GCAGATGCTGGACGGTCGTGGCGAGCAGGGCGGCGGTTACCAGCAGGGCGGCCAGGGCGGCGGCTACCAGCAGCAGGATG
GCGGTTACAACCAGGGTGGCTATCAGGACGAATACGCCCAGGGCCGCTCTGCGCCTTCTCCCATGGCGCCCTCCAACCAT
TCCAATCAGTCCCAGGGCCAGCCGCAGAATCGCCCGGCGAACAATCCGGCGCCTATGGGCGGGTTCGATAACAGCTTCGA
CGACGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.051

100

0.568
  ssb Glaesserella parasuis strain SC1401

55.497

99.479

0.552
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474
  ssb Neisseria meningitidis MC58

47.368

98.958

0.469