Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   R5Y33_RS04185 Genome accession   NZ_CP137531
Coordinates   794780..796525 (-) Length   581 a.a.
NCBI ID   WP_101079019.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM741     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 789780..801525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y33_RS04165 - 790004..790438 (+) 435 WP_002220974.1 hypothetical protein -
  R5Y33_RS04170 - 790497..790766 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  R5Y33_RS04175 lon 790948..793398 (-) 2451 WP_343336512.1 endopeptidase La -
  R5Y33_RS04180 - 793649..794752 (+) 1104 WP_002240523.1 class I SAM-dependent methyltransferase -
  R5Y33_RS04185 recD 794780..796525 (-) 1746 WP_101079019.1 exodeoxyribonuclease V subunit alpha Machinery gene
  R5Y33_RS04190 lolD 796593..797288 (-) 696 WP_002240525.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  R5Y33_RS04195 - 797281..798528 (-) 1248 WP_002235820.1 lipoprotein-releasing ABC transporter permease subunit -
  R5Y33_RS04200 - 798733..799011 (+) 279 WP_002213502.1 hypothetical protein -
  R5Y33_RS04205 recR 799067..799684 (-) 618 WP_002217147.1 recombination mediator RecR -
  R5Y33_RS04210 - 799751..801289 (-) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63085.66 Da        Isoelectric Point: 5.5000

>NTDB_id=898889 R5Y33_RS04185 WP_101079019.1 794780..796525(-) (recD) [Neisseria meningitidis strain EXNM741]
MERQTDEFAQAAARAVIWFLARYAGSSDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGIGDVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPLLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=898889 R5Y33_RS04185 WP_101079019.1 794780..796525(-) (recD) [Neisseria meningitidis strain EXNM741]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGTAATCTGGTTTTTGGCACGCTATGCGGGTTCCAG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGTATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGACGTGCTGTCCGTCCTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGTGCAAATCCGCCCTTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.32

100

0.943