Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   R5Y34_RS03835 Genome accession   NZ_CP137530
Coordinates   746661..747134 (+) Length   157 a.a.
NCBI ID   WP_195183013.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM678     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741661..752134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS03810 dnaB 742056..743462 (+) 1407 WP_002213843.1 replicative DNA helicase -
  R5Y34_RS03815 pilH 743771..744439 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R5Y34_RS03820 pilV 744469..745089 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Machinery gene
  R5Y34_RS03825 pilJ 745086..746084 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  R5Y34_RS03830 pilK 746063..746656 (+) 594 WP_002255851.1 pilus assembly protein Machinery gene
  R5Y34_RS03835 pilX 746661..747134 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  R5Y34_RS03840 - 748017..748442 (-) 426 Protein_745 AzlC family ABC transporter permease -
  R5Y34_RS03845 dut 748585..749037 (+) 453 WP_002250021.1 dUTP diphosphatase -
  R5Y34_RS03850 dapC 749113..750300 (+) 1188 WP_061727608.1 succinyldiaminopimelate transaminase -
  R5Y34_RS03855 yaaA 750562..751341 (+) 780 WP_002235690.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17595.43 Da        Isoelectric Point: 9.7023

>NTDB_id=898845 R5Y34_RS03835 WP_195183013.1 746661..747134(+) (pilX) [Neisseria meningitidis strain EXNM678]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDKEKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDKASAEAYSETLFADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=898845 R5Y34_RS03835 WP_195183013.1 746661..747134(+) (pilX) [Neisseria meningitidis strain EXNM678]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTCTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATAAGG
CTTCTGCCGAAGCCTATTCGGAGACCTTGTTCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

90.446

100

0.904
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892