Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   R5Y34_RS03815 Genome accession   NZ_CP137530
Coordinates   743771..744439 (+) Length   222 a.a.
NCBI ID   WP_014575282.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM678     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 738771..749439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS03795 - 739561..739893 (+) 333 WP_002226445.1 hypothetical protein -
  R5Y34_RS03800 - 740225..740734 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  R5Y34_RS03805 - 741306..741893 (-) 588 WP_154074380.1 superoxide dismutase -
  R5Y34_RS03810 dnaB 742056..743462 (+) 1407 WP_002213843.1 replicative DNA helicase -
  R5Y34_RS03815 pilH 743771..744439 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R5Y34_RS03820 pilV 744469..745089 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Machinery gene
  R5Y34_RS03825 pilJ 745086..746084 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  R5Y34_RS03830 pilK 746063..746656 (+) 594 WP_002255851.1 pilus assembly protein Machinery gene
  R5Y34_RS03835 pilX 746661..747134 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  R5Y34_RS03840 - 748017..748442 (-) 426 Protein_745 AzlC family ABC transporter permease -
  R5Y34_RS03845 dut 748585..749037 (+) 453 WP_002250021.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24795.30 Da        Isoelectric Point: 9.5822

>NTDB_id=898841 R5Y34_RS03815 WP_014575282.1 743771..744439(+) (pilH) [Neisseria meningitidis strain EXNM678]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=898841 R5Y34_RS03815 WP_014575282.1 743771..744439(+) (pilH) [Neisseria meningitidis strain EXNM678]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847