Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   R5Y34_RS03830 Genome accession   NZ_CP137530
Coordinates   746063..746656 (+) Length   197 a.a.
NCBI ID   WP_002255851.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM678     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741063..751656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS03805 - 741306..741893 (-) 588 WP_154074380.1 superoxide dismutase -
  R5Y34_RS03810 dnaB 742056..743462 (+) 1407 WP_002213843.1 replicative DNA helicase -
  R5Y34_RS03815 pilH 743771..744439 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R5Y34_RS03820 pilV 744469..745089 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Machinery gene
  R5Y34_RS03825 pilJ 745086..746084 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  R5Y34_RS03830 pilK 746063..746656 (+) 594 WP_002255851.1 pilus assembly protein Machinery gene
  R5Y34_RS03835 pilX 746661..747134 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  R5Y34_RS03840 - 748017..748442 (-) 426 Protein_745 AzlC family ABC transporter permease -
  R5Y34_RS03845 dut 748585..749037 (+) 453 WP_002250021.1 dUTP diphosphatase -
  R5Y34_RS03850 dapC 749113..750300 (+) 1188 WP_061727608.1 succinyldiaminopimelate transaminase -
  R5Y34_RS03855 yaaA 750562..751341 (+) 780 WP_002235690.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21512.39 Da        Isoelectric Point: 6.3728

>NTDB_id=898844 R5Y34_RS03830 WP_002255851.1 746063..746656(+) (pilK) [Neisseria meningitidis strain EXNM678]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMVYGKGTQSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=898844 R5Y34_RS03830 WP_002255851.1 746063..746656(+) (pilK) [Neisseria meningitidis strain EXNM678]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTACAG
GCCTGTGCATTGACAATAAAGGGATGGTATATGGGAAAGGCACGCAAAGTGTCAGCAAACCGCCGCGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.888