Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M2Z51_RS12275 Genome accession   NZ_AP024967
Coordinates   2714247..2714780 (-) Length   177 a.a.
NCBI ID   WP_032476702.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2709247..2719780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS12255 (V130003_24360) - 2709699..2710019 (-) 321 WP_000252818.1 hypothetical protein -
  M2Z51_RS12260 (V130003_24370) gspM 2710012..2710662 (-) 651 WP_000835144.1 type II secretion system protein GspM -
  M2Z51_RS12265 (V130003_24380) - 2710659..2712098 (-) 1440 WP_032476703.1 PilN domain-containing protein -
  M2Z51_RS12270 (V130003_24390) csrD 2712111..2714123 (-) 2013 WP_002154885.1 RNase E specificity factor CsrD -
  M2Z51_RS12275 (V130003_24400) ssb 2714247..2714780 (-) 534 WP_032476702.1 single-stranded DNA-binding protein Machinery gene
  M2Z51_RS12280 (V130003_24410) qstR 2715072..2715716 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  M2Z51_RS12285 (V130003_24420) galU 2715888..2716760 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M2Z51_RS12290 (V130003_24430) uvrA 2716916..2719738 (+) 2823 WP_032476701.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19634.81 Da        Isoelectric Point: 5.7626

>NTDB_id=89810 M2Z51_RS12275 WP_032476702.1 2714247..2714780(-) (ssb) [Vibrio cholerae strain V130003]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMSAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=89810 M2Z51_RS12275 WP_032476702.1 2714247..2714780(-) (ssb) [Vibrio cholerae strain V130003]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGTCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

98.87

100

0.989
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

46.667

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.475

Multiple sequence alignment