Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R5H20_RS23395 Genome accession   NZ_CP137345
Coordinates   4601725..4602237 (-) Length   170 a.a.
NCBI ID   WP_006639815.1    Uniprot ID   -
Organism   Bacillus sp. KICET-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4596725..4607237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS23370 (R5H20_23370) - 4597335..4597475 (-) 141 WP_006639811.1 hypothetical protein -
  R5H20_RS23375 (R5H20_23375) - 4597637..4598116 (+) 480 WP_006639812.1 spore coat protein -
  R5H20_RS23380 (R5H20_23380) - 4598184..4599635 (-) 1452 WP_006639813.1 SulP family inorganic anion transporter -
  R5H20_RS23385 (R5H20_23385) - 4599799..4601145 (+) 1347 WP_173400978.1 MFS transporter -
  R5H20_RS23390 (R5H20_23390) rpsR 4601438..4601677 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  R5H20_RS23395 (R5H20_23395) ssbA 4601725..4602237 (-) 513 WP_006639815.1 single-stranded DNA-binding protein SsbA Machinery gene
  R5H20_RS23400 (R5H20_23400) rpsF 4602284..4602571 (-) 288 WP_006639816.1 30S ribosomal protein S6 -
  R5H20_RS23405 (R5H20_23405) ychF 4602684..4603784 (-) 1101 WP_006639817.1 redox-regulated ATPase YchF -
  R5H20_RS23410 (R5H20_23410) - 4603975..4604181 (-) 207 WP_006639818.1 DUF951 domain-containing protein -
  R5H20_RS23415 (R5H20_23415) - 4604358..4605374 (-) 1017 WP_040348621.1 membrane protein -
  R5H20_RS23420 (R5H20_23420) yyaC 4605451..4606068 (+) 618 WP_006639820.1 spore protease YyaC -
  R5H20_RS23425 (R5H20_23425) - 4606152..4607000 (-) 849 WP_006639821.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18455.07 Da        Isoelectric Point: 4.7306

>NTDB_id=897624 R5H20_RS23395 WP_006639815.1 4601725..4602237(-) (ssbA) [Bacillus sp. KICET-3]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQYFGGGQNDPNPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=897624 R5H20_RS23395 WP_006639815.1 4601725..4602237(-) (ssbA) [Bacillus sp. KICET-3]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCCAGCGGTGCAGCTGTTGC
CACCTTTACGCTCGCTGTGAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTCGTTT
GGAGAAGACAAGCTGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGCCTTGCGGGTGTAGATGGACGTTTGCAAACGAGG
AACTATGAAAATCAGCAGGGACAGCGTGTTTATGTGACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAATACTTTGGCGGCGGACAAAACGATCCGAATCCAT
TCGGCGGCAGTCAGAACAATCAAAATCGCAATCAAGGCAACAGCTTTAATGATGACCCATTTGCCAATGATGGAAAACCG
ATTGACATCTCAGATGATGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.465

100

0.865
  ssb Latilactobacillus sakei subsp. sakei 23K

59.538

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

36.872

100

0.388