Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | LDM87_RS00750 | Genome accession | NZ_AP024964 |
| Coordinates | 157272..158408 (+) | Length | 378 a.a. |
| NCBI ID | WP_212888858.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #6 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 152272..163408
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM87_RS00715 (OHP006_01440) | panD | 152729..153079 (+) | 351 | WP_073470207.1 | aspartate 1-decarboxylase | - |
| LDM87_RS00720 (OHP006_01450) | - | 153090..153383 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LDM87_RS00725 (OHP006_01460) | - | 153383..154378 (+) | 996 | WP_223894148.1 | PDZ domain-containing protein | - |
| LDM87_RS00730 (OHP006_01470) | comB6 | 154384..155439 (+) | 1056 | WP_223894150.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| LDM87_RS00735 | comB7 | 155455..155580 (+) | 126 | WP_120902658.1 | comB7 lipoprotein | Machinery gene |
| LDM87_RS00740 (OHP006_01480) | comB8 | 155577..156314 (+) | 738 | WP_075708163.1 | virB8 family protein | Machinery gene |
| LDM87_RS00745 (OHP006_01490) | comB9 | 156314..157279 (+) | 966 | WP_223893185.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| LDM87_RS00750 (OHP006_01500) | comB10 | 157272..158408 (+) | 1137 | WP_212888858.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| LDM87_RS00755 (OHP006_01510) | - | 158478..159890 (+) | 1413 | WP_223893187.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| LDM87_RS00760 (OHP006_01520) | gmd | 159905..161050 (+) | 1146 | WP_187832471.1 | GDP-mannose 4,6-dehydratase | - |
| LDM87_RS00765 (OHP006_01530) | - | 161043..161975 (+) | 933 | WP_015085307.1 | GDP-L-fucose synthase | - |
| LDM87_RS00770 (OHP006_01540) | hypE | 162225..163223 (-) | 999 | WP_223893188.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42137.66 Da Isoelectric Point: 9.8540
>NTDB_id=89730 LDM87_RS00750 WP_212888858.1 157272..158408(+) (comB10) [Helicobacter pylori strain #6]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=89730 LDM87_RS00750 WP_212888858.1 157272..158408(+) (comB10) [Helicobacter pylori strain #6]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCAGCTTTAAACAACAGAGGCAATAAAGAAGAGGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTAAAATAA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCAGCTTTAAACAACAGAGGCAATAAAGAAGAGGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.767 |
100 |
0.958 |