Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | LDM87_RS00730 | Genome accession | NZ_AP024964 |
| Coordinates | 154384..155439 (+) | Length | 351 a.a. |
| NCBI ID | WP_223894150.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #6 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 149384..160439
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM87_RS00700 (OHP006_01410) | - | 149809..150222 (+) | 414 | WP_001022997.1 | universal stress protein | - |
| LDM87_RS00705 (OHP006_01420) | - | 150242..150517 (+) | 276 | WP_000784960.1 | ATP-dependent Clp protease adaptor ClpS | - |
| LDM87_RS00710 (OHP006_01430) | - | 150517..152739 (+) | 2223 | WP_223893182.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| LDM87_RS00715 (OHP006_01440) | panD | 152729..153079 (+) | 351 | WP_073470207.1 | aspartate 1-decarboxylase | - |
| LDM87_RS00720 (OHP006_01450) | - | 153090..153383 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LDM87_RS00725 (OHP006_01460) | - | 153383..154378 (+) | 996 | WP_223894148.1 | PDZ domain-containing protein | - |
| LDM87_RS00730 (OHP006_01470) | comB6 | 154384..155439 (+) | 1056 | WP_223894150.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| LDM87_RS00735 | comB7 | 155455..155580 (+) | 126 | WP_120902658.1 | comB7 lipoprotein | Machinery gene |
| LDM87_RS00740 (OHP006_01480) | comB8 | 155577..156314 (+) | 738 | WP_075708163.1 | virB8 family protein | Machinery gene |
| LDM87_RS00745 (OHP006_01490) | comB9 | 156314..157279 (+) | 966 | WP_223893185.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| LDM87_RS00750 (OHP006_01500) | comB10 | 157272..158408 (+) | 1137 | WP_212888858.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| LDM87_RS00755 (OHP006_01510) | - | 158478..159890 (+) | 1413 | WP_223893187.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39913.97 Da Isoelectric Point: 8.8165
>NTDB_id=89726 LDM87_RS00730 WP_223894150.1 154384..155439(+) (comB6) [Helicobacter pylori strain #6]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFVLFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDVHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDIINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFVLFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDVHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDIINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=89726 LDM87_RS00730 WP_223894150.1 154384..155439(+) (comB6) [Helicobacter pylori strain #6]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACAGCGATTCTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCATTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGTGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGTGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGTACCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCCACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATATAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACAGCGATTCTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCATTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGTGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGTGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGTACCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCCACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATATAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
95.442 |
100 |
0.954 |