Detailed information NTG0089729

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: LDM87_RS00745
• Genome accession: NZ_AP024964
• Coordinates: 156314..157279 (+)
• Length: 321 a.a.
• NCBI ID: WP_223893185.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain #6
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 151314..162279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDM87_RS00715 (OHP006_01440)	panD	152729..153079 (+)	351	WP_073470207.1	aspartate 1-decarboxylase	-
LDM87_RS00720 (OHP006_01450)	-	153090..153383 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
LDM87_RS00725 (OHP006_01460)	-	153383..154378 (+)	996	WP_223894148.1	PDZ domain-containing protein	-
LDM87_RS00730 (OHP006_01470)	comB6	154384..155439 (+)	1056	WP_223894150.1	P-type conjugative transfer protein TrbL	Machinery gene
LDM87_RS00735	comB7	155455..155580 (+)	126	WP_120902658.1	comB7 lipoprotein	Machinery gene
LDM87_RS00740 (OHP006_01480)	comB8	155577..156314 (+)	738	WP_075708163.1	virB8 family protein	Machinery gene
LDM87_RS00745 (OHP006_01490)	comB9	156314..157279 (+)	966	WP_223893185.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LDM87_RS00750 (OHP006_01500)	comB10	157272..158408 (+)	1137	WP_212888858.1	DNA type IV secretion system protein ComB10	Machinery gene
LDM87_RS00755 (OHP006_01510)	-	158478..159890 (+)	1413	WP_223893187.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LDM87_RS00760 (OHP006_01520)	gmd	159905..161050 (+)	1146	WP_187832471.1	GDP-mannose 4,6-dehydratase	-
LDM87_RS00765 (OHP006_01530)	-	161043..161975 (+)	933	WP_015085307.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 37020.61 Da
• Isoelectric Point: 9.3455

>NTDB_id=89729 LDM87_RS00745 WP_223893185.1 156314..157279(+) (comB9) [Helicobacter pylori strain #6]
MRKVLYALVGFLLVFSALKADDFLEEANETTPVNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILFIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=89729 LDM87_RS00745 WP_223893185.1 156314..157279(+) (comB9) [Helicobacter pylori strain #6]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTCTAGAAGAAGC
TAACGAAACAACCCCGGTGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGTTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAATAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGTGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.104	100	0.925