Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ABC804_RS02700 Genome accession   NZ_CP155536
Coordinates   483205..483864 (-) Length   219 a.a.
NCBI ID   WP_000565024.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478205..488864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS02670 (ABC804_02670) - 478385..478984 (+) 600 WP_000169899.1 phosphoribosylanthranilate isomerase -
  ABC804_RS02675 (ABC804_02675) trpB 478962..480185 (+) 1224 WP_000331297.1 tryptophan synthase subunit beta -
  ABC804_RS02680 (ABC804_02680) trpA 480178..480954 (+) 777 WP_001127028.1 tryptophan synthase subunit alpha -
  ABC804_RS02685 (ABC804_02685) - 480926..481027 (-) 102 Protein_473 prepilin peptidase -
  ABC804_RS02690 (ABC804_02690) - 481256..481987 (+) 732 WP_000934017.1 hypothetical protein -
  ABC804_RS02695 (ABC804_02695) - 482002..483153 (+) 1152 WP_000481758.1 XRE family transcriptional regulator -
  ABC804_RS02700 (ABC804_02700) cclA/cilC 483205..483864 (-) 660 WP_000565024.1 A24 family peptidase Machinery gene
  ABC804_RS02705 (ABC804_02705) - 483934..484380 (+) 447 WP_000155412.1 GNAT family N-acetyltransferase -
  ABC804_RS02710 (ABC804_02710) - 484608..485786 (-) 1179 WP_000175878.1 ROK family transcriptional regulator -
  ABC804_RS02715 (ABC804_02715) - 486066..487328 (+) 1263 WP_000413345.1 PTS sugar transporter subunit IIC -
  ABC804_RS02720 (ABC804_02720) - 487331..488227 (+) 897 WP_000825665.1 PEP phosphonomutase -
  ABC804_RS02725 (ABC804_02725) - 488242..488559 (+) 318 WP_001151646.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24951.16 Da        Isoelectric Point: 8.2409

>NTDB_id=897166 ABC804_RS02700 WP_000565024.1 483205..483864(-) (cclA/cilC) [Streptococcus pneumoniae strain M264-3]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSASHCDSCQTRLRPLDLIPILSQVFNRFRCRYCKVRYPVWYALFELVLG
LLFLLYSWKLLSLGQVVLITAGLTLGIYDFHHQEYPLLVWMTFHLILITSSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFILQKKKERLPFVPFLLLATCLIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=897166 ABC804_RS02700 WP_000565024.1 483205..483864(-) (cclA/cilC) [Streptococcus pneumoniae strain M264-3]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGCCAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTCGCTGTCGCTACTGCAAAGTTCGCTATCCTGTCTGGTATGCCCTCTTTGAATTAGTCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGAAATTGCTTTCCTTGGGGCAAGTCGTCCTAATCACCGCTGGTTTGACCTTGGGTAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATAACTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGCGCAGGGGATTTCCTC
TTTTTAGCTTCTTGTGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTTGCTTCTGCGACGGGTATCCT
GGCCTTTATCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTACTGCTTGTCTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

96.804

100

0.968
  cclA/cilC Streptococcus pneumoniae Rx1

95.434

100

0.954
  cclA/cilC Streptococcus pneumoniae D39

95.434

100

0.954
  cclA/cilC Streptococcus pneumoniae R6

95.434

100

0.954
  cclA/cilC Streptococcus mitis SK321

91.324

100

0.913
  cclA/cilC Streptococcus mitis NCTC 12261

85.388

100

0.854