Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   ABC804_RS00280 Genome accession   NZ_CP155536
Coordinates   38168..38404 (-) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 33168..43404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS00255 (ABC804_00255) - 33378..33743 (+) 366 WP_000492031.1 helix-turn-helix transcriptional regulator -
  ABC804_RS00260 (ABC804_00260) - 33756..34139 (+) 384 WP_000136459.1 ImmA/IrrE family metallo-endopeptidase -
  ABC804_RS00265 (ABC804_00265) - 34152..35075 (+) 924 WP_000122591.1 exonuclease domain-containing protein -
  ABC804_RS00270 (ABC804_00270) - 35261..36409 (+) 1149 WP_000876732.1 site-specific integrase -
  ABC804_RS00275 (ABC804_00275) - 36651..37937 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  ABC804_RS00280 (ABC804_00280) comW 38168..38404 (-) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  ABC804_RS00285 (ABC804_00285) - 38670..39467 (+) 798 Protein_55 transposase -
  ABC804_RS00290 (ABC804_00290) - 39502..39711 (-) 210 Protein_56 transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=897119 ABC804_RS00280 WP_000939546.1 38168..38404(-) (comW) [Streptococcus pneumoniae strain M264-3]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=897119 ABC804_RS00280 WP_000939546.1 38168..38404(-) (comW) [Streptococcus pneumoniae strain M264-3]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756