Detailed information NTG0089700

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ52_RS21040
• Genome accession: NZ_AP027721
• Coordinates: 4333456..4334481 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain TBU0218_11-3CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4328456..4339481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ52_RS21020 (VEE67_40200)	metJ	4329517..4329834 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
AABJ52_RS21025 (VEE67_40210)	yiiX	4330018..4330626 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
AABJ52_RS21030 (VEE67_40220)	rpmE	4330687..4330899 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ52_RS21035 (VEE67_40230)	priA	4331102..4333300 (+)	2199	WP_172411009.1	primosomal protein N'	Machinery gene
AABJ52_RS21040 (VEE67_40240)	cytR	4333456..4334481 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ52_RS21045 (VEE67_40250)	ftsN	4334573..4335532 (+)	960	WP_000068828.1	cell division protein FtsN	-
AABJ52_RS21050 (VEE67_40260)	hslV	4335625..4336155 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ52_RS21055 (VEE67_40270)	hslU	4336165..4337496 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ52_RS21060 (VEE67_40280)	menA	4337563..4338489 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ52_RS21065 (VEE67_40290)	rraA	4338582..4339067 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ52_RS21070 (VEE67_40300)	zapB	4339152..4339397 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=89700 AABJ52_RS21040 WP_000644904.1 4333456..4334481(+) (cytR) [Escherichia coli strain TBU0218_11-3CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=89700 AABJ52_RS21040 WP_000644904.1 4333456..4334481(+) (cytR) [Escherichia coli strain TBU0218_11-3CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628