Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | LDM86_RS06875 | Genome accession | NZ_AP024962 |
| Coordinates | 1427079..1428215 (-) | Length | 378 a.a. |
| NCBI ID | WP_223889100.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #3 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1422079..1433215
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM86_RS06855 (OHP003_13670) | hypE | 1422246..1423244 (+) | 999 | WP_223889097.1 | hydrogenase expression/formation protein HypE | - |
| LDM86_RS06860 (OHP003_13680) | - | 1423513..1424445 (-) | 933 | WP_223889098.1 | GDP-L-fucose synthase | - |
| LDM86_RS06865 (OHP003_13690) | gmd | 1424438..1425583 (-) | 1146 | WP_075708197.1 | GDP-mannose 4,6-dehydratase | - |
| LDM86_RS06870 (OHP003_13700) | - | 1425597..1427009 (-) | 1413 | WP_223889099.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| LDM86_RS06875 (OHP003_13710) | comB10 | 1427079..1428215 (-) | 1137 | WP_223889100.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| LDM86_RS06880 (OHP003_13720) | comB9 | 1428208..1429173 (-) | 966 | WP_223889101.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| LDM86_RS06885 (OHP003_13730) | comB8 | 1429173..1429916 (-) | 744 | WP_212894963.1 | virB8 family protein | Machinery gene |
| LDM86_RS06890 | comB7 | 1429913..1430038 (-) | 126 | WP_075668089.1 | comB7 lipoprotein | Machinery gene |
| LDM86_RS06895 (OHP003_13740) | comB6 | 1430054..1431109 (-) | 1056 | WP_223889102.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| LDM86_RS06900 (OHP003_13750) | - | 1431117..1432112 (-) | 996 | WP_223889612.1 | PDZ domain-containing protein | - |
| LDM86_RS06905 (OHP003_13760) | - | 1432112..1432405 (-) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LDM86_RS06910 (OHP003_13770) | panD | 1432416..1432766 (-) | 351 | WP_140515993.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42041.62 Da Isoelectric Point: 9.9225
>NTDB_id=89697 LDM86_RS06875 WP_223889100.1 1427079..1428215(-) (comB10) [Helicobacter pylori strain #3]
MNKWIKGALVFAGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSSLIDSKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYSGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSRIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGALVFAGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSSLIDSKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYSGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSRIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=89697 LDM86_RS06875 WP_223889100.1 1427079..1428215(-) (comB10) [Helicobacter pylori strain #3]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGCAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCTCTCTCATAGATTCAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCACAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAGCGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGTAGAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTTATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGCAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCTCTCTCATAGATTCAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCACAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAGCGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGTAGAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTTATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
93.915 |
100 |
0.939 |