Detailed information NTG0089698

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: LDM86_RS06880
• Genome accession: NZ_AP024962
• Coordinates: 1428208..1429173 (-)
• Length: 321 a.a.
• NCBI ID: WP_223889101.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain #3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1423208..1434173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDM86_RS06860 (OHP003_13680)	-	1423513..1424445 (-)	933	WP_223889098.1	GDP-L-fucose synthase	-
LDM86_RS06865 (OHP003_13690)	gmd	1424438..1425583 (-)	1146	WP_075708197.1	GDP-mannose 4,6-dehydratase	-
LDM86_RS06870 (OHP003_13700)	-	1425597..1427009 (-)	1413	WP_223889099.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LDM86_RS06875 (OHP003_13710)	comB10	1427079..1428215 (-)	1137	WP_223889100.1	DNA type IV secretion system protein ComB10	Machinery gene
LDM86_RS06880 (OHP003_13720)	comB9	1428208..1429173 (-)	966	WP_223889101.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LDM86_RS06885 (OHP003_13730)	comB8	1429173..1429916 (-)	744	WP_212894963.1	virB8 family protein	Machinery gene
LDM86_RS06890	comB7	1429913..1430038 (-)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
LDM86_RS06895 (OHP003_13740)	comB6	1430054..1431109 (-)	1056	WP_223889102.1	P-type conjugative transfer protein TrbL	Machinery gene
LDM86_RS06900 (OHP003_13750)	-	1431117..1432112 (-)	996	WP_223889612.1	PDZ domain-containing protein	-
LDM86_RS06905 (OHP003_13760)	-	1432112..1432405 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
LDM86_RS06910 (OHP003_13770)	panD	1432416..1432766 (-)	351	WP_140515993.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 37027.62 Da
• Isoelectric Point: 9.0863

>NTDB_id=89698 LDM86_RS06880 WP_223889101.1 1428208..1429173(-) (comB9) [Helicobacter pylori strain #3]
MRKVLCTLVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=89698 LDM86_RS06880 WP_223889101.1 1428208..1429173(-) (comB9) [Helicobacter pylori strain #3]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGATTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACTAAAGAAGAAGAGACTATAACGATTGGCGATAACACGAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGAAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAGTTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931