Detailed information NTG0089701

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: LDM86_RS06895
• Genome accession: NZ_AP024962
• Coordinates: 1430054..1431109 (-)
• Length: 351 a.a.
• NCBI ID: WP_223889102.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain #3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1425054..1436109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDM86_RS06870 (OHP003_13700)	-	1425597..1427009 (-)	1413	WP_223889099.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LDM86_RS06875 (OHP003_13710)	comB10	1427079..1428215 (-)	1137	WP_223889100.1	DNA type IV secretion system protein ComB10	Machinery gene
LDM86_RS06880 (OHP003_13720)	comB9	1428208..1429173 (-)	966	WP_223889101.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LDM86_RS06885 (OHP003_13730)	comB8	1429173..1429916 (-)	744	WP_212894963.1	virB8 family protein	Machinery gene
LDM86_RS06890	comB7	1429913..1430038 (-)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
LDM86_RS06895 (OHP003_13740)	comB6	1430054..1431109 (-)	1056	WP_223889102.1	P-type conjugative transfer protein TrbL	Machinery gene
LDM86_RS06900 (OHP003_13750)	-	1431117..1432112 (-)	996	WP_223889612.1	PDZ domain-containing protein	-
LDM86_RS06905 (OHP003_13760)	-	1432112..1432405 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
LDM86_RS06910 (OHP003_13770)	panD	1432416..1432766 (-)	351	WP_140515993.1	aspartate 1-decarboxylase	-
LDM86_RS06915 (OHP003_13780)	-	1432756..1434978 (-)	2223	WP_223889103.1	ATP-dependent Clp protease ATP-binding subunit	-
LDM86_RS06920 (OHP003_13790)	-	1434978..1435253 (-)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
LDM86_RS06925 (OHP003_13800)	-	1435273..1435686 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39851.82 Da
• Isoelectric Point: 8.8165

>NTDB_id=89701 LDM86_RS06895 WP_223889102.1 1430054..1431109(-) (comB6) [Helicobacter pylori strain #3]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPVSSSVSTSMRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=89701 LDM86_RS06895 WP_223889102.1 1430054..1431109(-) (comB6) [Helicobacter pylori strain #3]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTTACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGCTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGTTTCTTCTAGCGTTTCTACTTCTATGAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974