Detailed information NTG0896984

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ABC799_RS09670
• Genome accession: NZ_CP155534
• Coordinates: 1883165..1884163 (-)
• Length: 332 a.a.
• NCBI ID: WP_001810210.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain DCC1476
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1878165..1889163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABC799_RS09650 (ABC799_09650)	eeP	1879530..1880789 (-)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator
ABC799_RS09655 (ABC799_09655)	-	1880811..1881614 (-)	804	WP_000189857.1	phosphatidate cytidylyltransferase	-
ABC799_RS09660 (ABC799_09660)	-	1881623..1882381 (-)	759	WP_000466719.1	isoprenyl transferase	-
ABC799_RS09665 (ABC799_09665)	-	1882612..1883184 (-)	573	Protein_1865	nucleotidyltransferase family protein	-
ABC799_RS09670 (ABC799_09670)	ruvB	1883165..1884163 (-)	999	WP_001810210.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ABC799_RS09675 (ABC799_09675)	-	1884297..1884389 (+)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
ABC799_RS09680 (ABC799_09680)	-	1885226..1885642 (-)	417	WP_000628395.1	GNAT family N-acetyltransferase	-
ABC799_RS09685 (ABC799_09685)	-	1885654..1886349 (-)	696	WP_001144906.1	GNAT family protein	-
ABC799_RS09690 (ABC799_09690)	leuS	1886544..1889045 (-)	2502	WP_000011786.1	leucine--tRNA ligase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37258.70 Da
• Isoelectric Point: 4.5053

>NTDB_id=896984 ABC799_RS09670 WP_001810210.1 1883165..1884163(-) (ruvB) [Streptococcus pneumoniae strain DCC1476]
MGRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=896984 ABC799_RS09670 WP_001810210.1 1883165..1884163(-) (ruvB) [Streptococcus pneumoniae strain DCC1476]
ATGGGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCAAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAACGAACTGGGAGTCAATCTT
AAGCAGACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCTCCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATCGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTCAATATCGCCGAAGAGCGTGAGACAG
TTGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47