Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5O33_RS07025 Genome accession   NZ_CP137220
Coordinates   1495264..1495803 (-) Length   179 a.a.
NCBI ID   WP_142836750.1    Uniprot ID   -
Organism   Proteus mirabilis strain PM23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1490264..1500803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5O33_RS06975 (R5O33_06975) - 1490913..1492097 (+) 1185 WP_250253997.1 tyrosine-type recombinase/integrase -
  R5O33_RS06980 (R5O33_06980) - 1492101..1492307 (-) 207 WP_080047900.1 helix-turn-helix transcriptional regulator -
  R5O33_RS06985 (R5O33_06985) - 1492520..1493122 (-) 603 WP_250253963.1 MT-A70 family methyltransferase -
  R5O33_RS06990 (R5O33_06990) - 1493109..1493465 (-) 357 WP_096043071.1 phage protein NinX family protein -
  R5O33_RS06995 (R5O33_06995) - 1493458..1493619 (-) 162 WP_277270370.1 hypothetical protein -
  R5O33_RS07000 (R5O33_07000) - 1493773..1494141 (-) 369 WP_063073714.1 hypothetical protein -
  R5O33_RS07005 (R5O33_07005) - 1494151..1494504 (-) 354 WP_063073715.1 hypothetical protein -
  R5O33_RS07010 (R5O33_07010) - 1494504..1494791 (-) 288 WP_060558090.1 cyclic-phosphate processing receiver domain-containing protein -
  R5O33_RS07015 (R5O33_07015) - 1494827..1495045 (-) 219 WP_142836744.1 hypothetical protein -
  R5O33_RS07020 (R5O33_07020) - 1495087..1495248 (-) 162 WP_153274246.1 hypothetical protein -
  R5O33_RS07025 (R5O33_07025) ssb 1495264..1495803 (-) 540 WP_142836750.1 single-stranded DNA-binding protein Machinery gene
  R5O33_RS07030 (R5O33_07030) - 1495793..1496494 (-) 702 WP_096043072.1 lambda exonuclease family protein -
  R5O33_RS07035 (R5O33_07035) - 1496487..1497107 (-) 621 WP_049206325.1 hypothetical protein -
  R5O33_RS07040 (R5O33_07040) - 1497147..1498073 (-) 927 WP_063073718.1 recombinase RecT -
  R5O33_RS07045 (R5O33_07045) - 1498070..1498291 (-) 222 WP_049199148.1 hypothetical protein -
  R5O33_RS07050 (R5O33_07050) - 1498288..1498542 (-) 255 WP_063073719.1 hypothetical protein -
  R5O33_RS07055 (R5O33_07055) - 1498550..1498705 (-) 156 WP_183129929.1 hypothetical protein -
  R5O33_RS07060 (R5O33_07060) - 1498777..1499010 (-) 234 WP_063073721.1 hypothetical protein -
  R5O33_RS07065 (R5O33_07065) - 1499045..1499317 (-) 273 WP_071233776.1 hypothetical protein -
  R5O33_RS07070 (R5O33_07070) - 1499486..1499767 (+) 282 WP_071233777.1 hypothetical protein -
  R5O33_RS07075 (R5O33_07075) - 1499739..1499975 (-) 237 WP_049220845.1 hypothetical protein -
  R5O33_RS07080 (R5O33_07080) - 1499986..1500279 (-) 294 WP_250253965.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19733.11 Da        Isoelectric Point: 7.2415

>NTDB_id=896970 R5O33_RS07025 WP_142836750.1 1495264..1495803(-) (ssb) [Proteus mirabilis strain PM23]
MASKGVNKCILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKDRVEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGTMQMLGGNGGNQAGSQKPQQNQGWGQPQQPQAPKQASSNQTPQSEPPQDWDD
PIPFAPIGLPYPRHAIYVI

Nucleotide


Download         Length: 540 bp        

>NTDB_id=896970 R5O33_RS07025 WP_142836750.1 1495264..1495803(-) (ssb) [Proteus mirabilis strain PM23]
ATGGCAAGTAAAGGCGTGAATAAATGTATTCTCATTGGTCACTTGGGGCAGGATCCAGAAATCCGTTATATGCCATCAGG
TGGCGCAGTCGCTAATCTCACACTAGCCACATCGGAATCGTGGCGTGATAAGCAGACTGGTGAAATGAAGGATCGGGTTG
AGTGGCATCGAGTGTGCATCTTCGGAAAATTAGCCGAAATTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATATATC
GAGGGCTCACTGCAAACCAGAAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACGGAAGTAGTGGTCAATATTGG
TGGAACAATGCAGATGCTAGGCGGTAACGGTGGTAATCAGGCAGGAAGCCAGAAGCCACAGCAAAACCAAGGATGGGGTC
AGCCTCAGCAACCGCAAGCGCCAAAACAAGCATCGAGTAATCAAACACCACAAAGTGAGCCACCTCAAGATTGGGATGAT
CCTATACCTTTCGCCCCTATCGGACTCCCCTACCCACGACACGCTATTTATGTGATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.667

98.883

0.659
  ssb Glaesserella parasuis strain SC1401

50.829

100

0.514
  ssb Neisseria meningitidis MC58

43.182

98.324

0.425
  ssb Neisseria gonorrhoeae MS11

42.614

98.324

0.419