Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2X24_RS21805 Genome accession   NZ_CP137170
Coordinates   4565659..4566183 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter portucalensis strain F621     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4560659..4571183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2X24_RS21795 (R2X24_21795) - 4562611..4562892 (+) 282 WP_003826625.1 YjcB family protein -
  R2X24_RS21800 (R2X24_21800) - 4562974..4565283 (-) 2310 WP_284969504.1 autotransporter outer membrane beta-barrel domain-containing protein -
  R2X24_RS21805 (R2X24_21805) ssb 4565659..4566183 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R2X24_RS21810 (R2X24_21810) uvrA 4566435..4569257 (+) 2823 WP_284969505.1 excinuclease ABC subunit UvrA -
  R2X24_RS21815 (R2X24_21815) - 4570635..4570991 (-) 357 WP_008786927.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=896688 R2X24_RS21805 WP_003826621.1 4565659..4566183(-) (ssb) [Citrobacter portucalensis strain F621]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=896688 R2X24_RS21805 WP_003826621.1 4565659..4566183(-) (ssb) [Citrobacter portucalensis strain F621]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACAGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAACAGTCAGCTCCGGCTGCGCCG
TCTAACGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5