Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDN16_RS02110 Genome accession   NZ_AP024961
Coordinates   463023..463502 (-) Length   159 a.a.
NCBI ID   WP_015444870.1    Uniprot ID   -
Organism   Legionella pneumophila strain 80-045     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 458023..468502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS02070 (LEG80045_03940) rplO 458155..458589 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  LDN16_RS02075 (LEG80045_03950) secY 458592..459920 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  LDN16_RS02080 rpmJ 459937..460050 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  LDN16_RS02085 (LEG80045_03960) rpsM 460128..460484 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  LDN16_RS02090 (LEG80045_03970) rpsK 460508..460906 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  LDN16_RS02095 (LEG80045_03980) rpsD 460923..461543 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  LDN16_RS02100 (LEG80045_03990) - 461562..462554 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  LDN16_RS02105 (LEG80045_04000) rplQ 462573..462956 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  LDN16_RS02110 (LEG80045_04010) ssb 463023..463502 (-) 480 WP_015444870.1 single-stranded DNA-binding protein Machinery gene
  LDN16_RS02115 (LEG80045_04020) - 463584..464951 (-) 1368 WP_027264842.1 MFS transporter -
  LDN16_RS02120 (LEG80045_04030) fabL 465113..465871 (+) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LDN16_RS02125 (LEG80045_04040) - 465942..466355 (+) 414 WP_027264841.1 acyl carrier protein -
  LDN16_RS02130 (LEG80045_04050) - 466355..467251 (+) 897 WP_027264840.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17643.40 Da        Isoelectric Point: 4.6616

>NTDB_id=89643 LDN16_RS02110 WP_015444870.1 463023..463502(-) (ssb) [Legionella pneumophila strain 80-045]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=89643 LDN16_RS02110 WP_015444870.1 463023..463502(-) (ssb) [Legionella pneumophila strain 80-045]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCAACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CCTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment