Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R4540_RS00060 Genome accession   NZ_CP137135
Coordinates   18746..19279 (+) Length   177 a.a.
NCBI ID   WP_000168289.1    Uniprot ID   Q9KUW2
Organism   Vibrio cholerae V52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 13746..24279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4540_RS00045 (R4540_00045) uvrA 13787..16609 (-) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -
  R4540_RS00050 (R4540_00050) galU 16765..17637 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  R4540_RS00055 (R4540_00055) qstR 17810..18454 (-) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  R4540_RS00060 (R4540_00060) ssb 18746..19279 (+) 534 WP_000168289.1 single-stranded DNA-binding protein Machinery gene
  R4540_RS00065 (R4540_00065) csrD 19403..21415 (+) 2013 WP_001918202.1 RNase E specificity factor CsrD -
  R4540_RS00070 (R4540_00070) - 21428..22867 (+) 1440 WP_000743253.1 PilN domain-containing protein -
  R4540_RS00075 (R4540_00075) gspM 22864..23514 (+) 651 WP_000835144.1 type II secretion system protein GspM -
  R4540_RS00080 (R4540_00080) - 23507..23824 (+) 318 WP_000252812.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19672.90 Da        Isoelectric Point: 5.7626

>NTDB_id=896414 R4540_RS00060 WP_000168289.1 18746..19279(+) (ssb) [Vibrio cholerae V52]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=896414 R4540_RS00060 WP_000168289.1 18746..19279(+) (ssb) [Vibrio cholerae V52]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

100

100

1
  ssb Glaesserella parasuis strain SC1401

50.265

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486