Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   R4705_RS05295 Genome accession   NZ_CP137115
Coordinates   1001652..1002314 (-) Length   220 a.a.
NCBI ID   WP_050084177.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 996652..1007314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS05270 - 996801..997067 (-) 267 WP_001278167.1 Veg family protein -
  R4705_RS05275 dnaB 997069..998421 (-) 1353 WP_000852486.1 replicative DNA helicase -
  R4705_RS05280 rplI 998465..998917 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  R4705_RS05285 - 998914..1000887 (-) 1974 WP_050084175.1 DHH family phosphoesterase -
  R4705_RS05290 hpf 1001024..1001572 (-) 549 WP_050084176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R4705_RS05295 comFC/cflB 1001652..1002314 (-) 663 WP_050084177.1 ComF family protein Machinery gene
  R4705_RS05300 comFA/cflA 1002311..1003609 (-) 1299 WP_000867612.1 DEAD/DEAH box helicase Machinery gene
  R4705_RS05305 - 1003665..1004300 (+) 636 WP_000395739.1 YigZ family protein -
  R4705_RS05310 cysK 1004585..1005505 (+) 921 WP_000029867.1 cysteine synthase A -
  R4705_RS05315 - 1005744..1006118 (-) 375 Protein_1004 IS66 family transposase -
  R4705_RS05320 - 1006091..1006378 (+) 288 Protein_1005 transposase -
  R4705_RS05325 tnpB 1006533..1006856 (-) 324 WP_000973415.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25257.10 Da        Isoelectric Point: 7.3688

>NTDB_id=896268 R4705_RS05295 WP_050084177.1 1001652..1002314(-) (comFC/cflB) [Streptococcus pneumoniae strain 20614-6]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGSKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=896268 R4705_RS05295 WP_050084177.1 1001652..1002314(-) (comFC/cflB) [Streptococcus pneumoniae strain 20614-6]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTTCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae Rx1

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae D39

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae R6

99.091

100

0.991
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909