Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R4705_RS04445 Genome accession   NZ_CP137115
Coordinates   825927..826880 (-) Length   317 a.a.
NCBI ID   WP_050095638.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 820927..831880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS04415 - 821688..822311 (-) 624 WP_050084194.1 hypothetical protein -
  R4705_RS04420 jag 822362..823348 (-) 987 WP_000260009.1 RNA-binding cell elongation regulator Jag/EloR -
  R4705_RS04425 - 823367..824191 (-) 825 WP_317815598.1 membrane protein insertase YidC -
  R4705_RS04430 rnpA 824166..824537 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R4705_RS04435 - 824554..824685 (-) 132 WP_000768904.1 hypothetical protein -
  R4705_RS04440 - 824686..825876 (-) 1191 WP_000167765.1 acetate kinase -
  R4705_RS04445 comYH 825927..826880 (-) 954 WP_050095638.1 class I SAM-dependent methyltransferase Machinery gene
  R4705_RS04450 - 826941..827535 (-) 595 Protein_845 class I SAM-dependent methyltransferase -
  R4705_RS04455 comGG/cglG 827672..828085 (-) 414 WP_050084191.1 competence type IV pilus minor pilin ComGG Machinery gene
  R4705_RS04460 comGF/cglF 828063..828524 (-) 462 WP_050084190.1 competence type IV pilus minor pilin ComGF Machinery gene
  R4705_RS04465 comGE/cglE 828487..828789 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R4705_RS04470 comGD/cglD 828752..829156 (-) 405 WP_001864568.1 competence type IV pilus minor pilin ComGD Machinery gene
  R4705_RS04475 comGC/cglC 829149..829475 (-) 327 WP_050084189.1 competence type IV pilus major pilin ComGC Machinery gene
  R4705_RS04480 comGB/cglB 829477..830493 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  R4705_RS04485 comGA/cglA/cilD 830441..831382 (-) 942 WP_050084188.1 competence type IV pilus ATPase ComGA Machinery gene
  R4705_RS04490 - 831459..831824 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35698.01 Da        Isoelectric Point: 4.2995

>NTDB_id=896254 R4705_RS04445 WP_050095638.1 825927..826880(-) (comYH) [Streptococcus pneumoniae strain 20614-6]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQVNHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=896254 R4705_RS04445 WP_050095638.1 825927..826880(-) (comYH) [Streptococcus pneumoniae strain 20614-6]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGTCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGTATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGACGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539