Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4701_RS00545 Genome accession   NZ_CP137114
Coordinates   120960..121913 (-) Length   317 a.a.
NCBI ID   WP_000495894.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P3054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 115960..126913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS00520 - 116450..116545 (-) 96 Protein_103 IS630 family transposase -
  R4701_RS00525 - 116958..117299 (+) 342 Protein_104 IS3 family transposase -
  R4701_RS00530 prsA 117416..118357 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  R4701_RS00535 - 118424..119137 (-) 714 WP_000230399.1 O-methyltransferase -
  R4701_RS00540 pepF 119139..120941 (-) 1803 WP_000244131.1 oligoendopeptidase F Regulator
  R4701_RS00545 coiA 120960..121913 (-) 954 WP_000495894.1 competence protein CoiA Machinery gene
  R4701_RS00550 tehB 121986..122846 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  R4701_RS00555 smpB 122862..123329 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4701_RS00560 rnr 123292..125646 (-) 2355 WP_000654882.1 ribonuclease R -
  R4701_RS00565 secG 125748..125981 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4701_RS00570 rpmG 126021..126170 (-) 150 WP_001810029.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38248.93 Da        Isoelectric Point: 9.2255

>NTDB_id=896146 R4701_RS00545 WP_000495894.1 120960..121913(-) (coiA) [Streptococcus pneumoniae strain 15P3054]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHIANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGKKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYRNFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=896146 R4701_RS00545 WP_000495894.1 120960..121913(-) (coiA) [Streptococcus pneumoniae strain 15P3054]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACATAGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTAAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCGGAACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

98.423

100

0.984
  coiA Streptococcus pneumoniae Rx1

97.792

100

0.978
  coiA Streptococcus pneumoniae D39

97.792

100

0.978
  coiA Streptococcus pneumoniae R6

97.792

100

0.978
  coiA Streptococcus mitis NCTC 12261

88.959

100

0.89
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435