Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4700_RS05580 Genome accession   NZ_CP137112
Coordinates   1083111..1083869 (+) Length   252 a.a.
NCBI ID   WP_000410381.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 02H2025     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078111..1088869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4700_RS05550 comE 1078701..1079453 (-) 753 WP_000866075.1 competence system response regulator transcription factor ComE Regulator
  R4700_RS05555 comD/comD1 1079450..1080775 (-) 1326 WP_025169508.1 competence system sensor histidine kinase ComD Regulator
  R4700_RS05560 comC 1080788..1080928 (-) 141 WP_000799697.1 competence-stimulating peptide ComC Regulator
  R4700_RS05570 rlmH 1081210..1081689 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4700_RS05575 htrA 1081872..1083053 (+) 1182 WP_000681598.1 S1C family serine protease Regulator
  R4700_RS05580 spo0J 1083111..1083869 (+) 759 WP_000410381.1 ParB/RepB/Spo0J family partition protein Regulator
  R4700_RS05585 dnaA 1084082..1085443 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4700_RS05590 dnaN 1085602..1086738 (+) 1137 WP_277771049.1 DNA polymerase III subunit beta -
  R4700_RS05595 - 1086803..1086997 (+) 195 WP_000285191.1 DUF951 domain-containing protein -
  R4700_RS05600 ychF 1087081..1088196 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4700_RS05605 pth 1088267..1088836 (+) 570 WP_000163928.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29255.63 Da        Isoelectric Point: 8.9980

>NTDB_id=896043 R4700_RS05580 WP_000410381.1 1083111..1083869(+) (spo0J) [Streptococcus pneumoniae strain 02H2025]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNYFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIIYFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=896043 R4700_RS05580 WP_000410381.1 1083111..1083869(+) (spo0J) [Streptococcus pneumoniae strain 02H2025]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATTATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTATTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504