Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4706_RS05310 Genome accession   NZ_CP137111
Coordinates   1058484..1059242 (-) Length   252 a.a.
NCBI ID   WP_044727839.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 17023     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1053484..1064242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4706_RS05285 pth 1053517..1054086 (-) 570 WP_000163933.1 aminoacyl-tRNA hydrolase -
  R4706_RS05290 ychF 1054157..1055272 (-) 1116 WP_044727838.1 redox-regulated ATPase YchF -
  R4706_RS05295 - 1055356..1055550 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4706_RS05300 dnaN 1055615..1056751 (-) 1137 WP_000581155.1 DNA polymerase III subunit beta -
  R4706_RS05305 dnaA 1056910..1058271 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4706_RS05310 spo0J 1058484..1059242 (-) 759 WP_044727839.1 ParB/RepB/Spo0J family partition protein Regulator
  R4706_RS05315 htrA 1059300..1060481 (-) 1182 WP_000681601.1 S1C family serine protease Regulator
  R4706_RS05320 rlmH 1060664..1061143 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4706_RS05330 comC/comC1 1061425..1061550 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4706_RS05335 comD/comD1 1061571..1062896 (+) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R4706_RS05340 comE 1062893..1063645 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29167.53 Da        Isoelectric Point: 9.0667

>NTDB_id=895940 R4706_RS05310 WP_044727839.1 1058484..1059242(-) (spo0J) [Streptococcus pneumoniae strain 17023]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYEALVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895940 R4706_RS05310 WP_044727839.1 1058484..1059242(-) (spo0J) [Streptococcus pneumoniae strain 17023]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAAGCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504