Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4712_RS00810 Genome accession   NZ_CP137110
Coordinates   173357..174310 (-) Length   317 a.a.
NCBI ID   WP_000495909.1    Uniprot ID   A0A0H2UPP6
Organism   Streptococcus pneumoniae strain 16H2041     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 168357..179310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS00785 - 168845..168940 (-) 96 Protein_156 IS630 family transposase -
  R4712_RS00790 - 169356..169697 (+) 342 Protein_157 transposase -
  R4712_RS00795 prsA 169813..170754 (-) 942 WP_000727952.1 peptidylprolyl isomerase PrsA -
  R4712_RS00800 - 170821..171534 (-) 714 WP_078102909.1 O-methyltransferase -
  R4712_RS00805 pepF 171536..173338 (-) 1803 WP_044812612.1 oligoendopeptidase F Regulator
  R4712_RS00810 coiA 173357..174310 (-) 954 WP_000495909.1 competence protein CoiA Machinery gene
  R4712_RS00815 tehB 174383..175243 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  R4712_RS00820 smpB 175259..175726 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4712_RS00825 rnr 175689..178043 (-) 2355 WP_000654872.1 ribonuclease R -
  R4712_RS00830 secG 178145..178378 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4712_RS00835 rpmG 178418..178567 (-) 150 WP_001809104.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38243.86 Da        Isoelectric Point: 8.9865

>NTDB_id=895836 R4712_RS00810 WP_000495909.1 173357..174310(-) (coiA) [Streptococcus pneumoniae strain 16H2041]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895836 R4712_RS00810 WP_000495909.1 173357..174310(-) (coiA) [Streptococcus pneumoniae strain 16H2041]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTGTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UPP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

100

100

1
  coiA Streptococcus pneumoniae Rx1

99.369

100

0.994
  coiA Streptococcus pneumoniae D39

99.369

100

0.994
  coiA Streptococcus pneumoniae R6

99.369

100

0.994
  coiA Streptococcus mitis NCTC 12261

89.274

100

0.893
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435