Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4704_RS10355 Genome accession   NZ_CP137109
Coordinates   1992003..1992956 (+) Length   317 a.a.
NCBI ID   WP_166735686.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1987003..1997956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS10330 rpmG 1987746..1987895 (+) 150 WP_001809104.1 50S ribosomal protein L33 -
  R4704_RS10335 secG 1987935..1988168 (+) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4704_RS10340 rnr 1988270..1990624 (+) 2355 WP_000654909.1 ribonuclease R -
  R4704_RS10345 smpB 1990587..1991054 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4704_RS10350 tehB 1991070..1991930 (+) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  R4704_RS10355 coiA 1992003..1992956 (+) 954 WP_166735686.1 competence protein CoiA Machinery gene
  R4704_RS10360 pepF 1992975..1994777 (+) 1803 WP_000244128.1 oligoendopeptidase F Regulator
  R4704_RS10365 - 1994779..1995492 (+) 714 WP_000230399.1 O-methyltransferase -
  R4704_RS10370 prsA 1995559..1996500 (+) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  R4704_RS10375 - 1996619..1996960 (-) 342 Protein_2006 transposase -
  R4704_RS10380 - 1997375..1997470 (+) 96 Protein_2007 IS630 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38185.83 Da        Isoelectric Point: 9.1159

>NTDB_id=895833 R4704_RS10355 WP_166735686.1 1992003..1992956(+) (coiA) [Streptococcus pneumoniae strain 11012]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHIANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLAILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895833 R4704_RS10355 WP_166735686.1 1992003..1992956(+) (coiA) [Streptococcus pneumoniae strain 11012]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACATAGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTGTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGCAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.054

100

0.991
  coiA Streptococcus pneumoniae Rx1

98.423

100

0.984
  coiA Streptococcus pneumoniae D39

98.423

100

0.984
  coiA Streptococcus pneumoniae R6

98.423

100

0.984
  coiA Streptococcus mitis NCTC 12261

88.328

100

0.883
  coiA Lactococcus lactis subsp. cremoris KW2

42.284

100

0.432