Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   LDO07_RS06615 Genome accession   NZ_AP024937
Coordinates   1223738..1225414 (+) Length   558 a.a.
NCBI ID   WP_223965554.1    Uniprot ID   A0AAD1NYD1
Organism   Thermus thermophilus strain AK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1218738..1230414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO07_RS06590 (TthAK1_12940) - 1220306..1221286 (-) 981 WP_018461695.1 YpdA family putative bacillithiol disulfide reductase -
  LDO07_RS06595 (TthAK1_12950) pilA/pilA1 1221452..1221922 (+) 471 WP_143585821.1 GspH/FimT family protein Machinery gene
  LDO07_RS06600 (TthAK1_12960) - 1221978..1222451 (+) 474 WP_223965551.1 GspH/FimT family protein -
  LDO07_RS06605 (TthAK1_12970) pilA/pilA2 1222469..1223029 (+) 561 WP_267461250.1 type II secretion system protein Machinery gene
  LDO07_RS06610 (TthAK1_12980) pilA/pilA3 1223026..1223727 (+) 702 WP_223965553.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LDO07_RS06615 (TthAK1_12990) comZ 1223738..1225414 (+) 1677 WP_223965554.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  LDO07_RS06620 (TthAK1_13000) - 1225635..1225985 (+) 351 WP_143585831.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDO07_RS06625 (TthAK1_13010) - 1226234..1226614 (+) 381 WP_223965555.1 DUF1640 domain-containing protein -
  LDO07_RS06630 (TthAK1_13020) - 1226690..1227232 (+) 543 WP_223966753.1 Uma2 family endonuclease -
  LDO07_RS06635 (TthAK1_13030) - 1227222..1227434 (+) 213 WP_223965556.1 DUF2281 domain-containing protein -
  LDO07_RS06640 (TthAK1_13040) - 1227533..1228090 (-) 558 WP_223965557.1 Uma2 family endonuclease -
  LDO07_RS06645 (TthAK1_13050) - 1228109..1228765 (-) 657 WP_124104343.1 chromosome segregation protein ScpA -
  LDO07_RS06650 (TthAK1_13060) trpS 1228762..1229775 (-) 1014 WP_143585847.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 59795.37 Da        Isoelectric Point: 6.4789

>NTDB_id=89561 LDO07_RS06615 WP_223965554.1 1223738..1225414(+) (comZ) [Thermus thermophilus strain AK1]
MNRKGIALVATLALMVVIALLVFGTFFTTQIELWTTRNDTTSVQAFYAAEAGLQKYKAALFQQYVWREQQGGTGGGSGCF
TSLARGLDLDRDGTLTPFVNNRLVLAQDEVVTDANGNPVGRYTVTLYKDAEDGQLFTLVSEGTSGGAKARVQATFRISNT
GYLEQAIFAGAGQANKWLNGGATIRGGVYVVGSPNDPDQYVIEANGNFALYNWYDLTTYSEVTNRVEPSYQRAQDLCASL
RVQYGKISVGGSTQIGEPNNKVKGVFVGRGAQDITGENVGVCQNNKGVCTEAMGGFDLSDPPPFPTLDAKLDSDACSAYP
TWRACLQGKAALRIQRIGNVLSVASPSDATLPSSCLQAMESGTLTLDTQSVDCTFTHLDGSRGGFRYTYTGDKKSGQGLL
EVFGDVVLEGIDVVLNRPVDYRAQSGSTKSATLAVLKLSGKGGNLDINGNLLPDATFGLFPNHALGLLAEGDIYQRGQYV
MAPLYAGGTFRVVKDNVLFGSVISNQFCTTSAGNQTQCNAGQKAEVVYIRIPKENRPVLLPSLRGGKPVFQVLSYERR

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=89561 LDO07_RS06615 WP_223965554.1 1223738..1225414(+) (comZ) [Thermus thermophilus strain AK1]
GTGAACCGCAAAGGTATCGCCCTTGTAGCCACTTTGGCCCTCATGGTGGTCATCGCCCTCTTGGTCTTCGGCACCTTCTT
CACCACCCAGATAGAGCTCTGGACCACCCGCAACGACACCACCTCGGTTCAGGCCTTCTACGCCGCTGAGGCCGGCCTGC
AGAAGTACAAGGCCGCCCTCTTCCAGCAGTACGTCTGGCGGGAGCAGCAGGGCGGGACGGGCGGAGGTAGCGGCTGCTTC
ACCTCCCTAGCAAGGGGGCTAGACCTGGACCGGGATGGAACCCTCACCCCCTTCGTCAACAACCGGCTGGTCCTGGCGCA
AGACGAGGTGGTCACCGACGCCAACGGCAACCCCGTGGGGCGGTACACGGTAACCCTTTACAAGGACGCCGAAGACGGCC
AGCTCTTCACCTTGGTCTCCGAGGGCACCTCGGGCGGGGCCAAGGCCCGGGTCCAGGCCACCTTCCGCATTAGCAACACG
GGCTACCTGGAGCAGGCCATCTTCGCCGGCGCGGGCCAGGCCAACAAGTGGCTGAACGGCGGGGCCACCATCCGGGGCGG
GGTCTACGTGGTGGGAAGCCCTAACGACCCGGACCAGTACGTCATAGAGGCCAACGGCAACTTCGCCCTCTACAACTGGT
ACGACCTCACCACCTACTCCGAGGTCACCAACCGGGTGGAACCCAGCTACCAGCGGGCCCAGGACCTCTGCGCAAGCCTT
AGGGTGCAGTACGGCAAGATTTCCGTGGGAGGAAGCACCCAGATCGGCGAGCCCAACAACAAGGTGAAGGGGGTCTTCGT
GGGCCGGGGCGCCCAGGACATCACCGGCGAGAACGTGGGGGTCTGCCAGAACAACAAAGGGGTCTGCACCGAGGCCATGG
GGGGCTTTGACCTCTCCGACCCGCCCCCCTTCCCCACCCTGGACGCCAAGCTGGACTCCGACGCCTGCAGCGCCTACCCC
ACCTGGCGGGCCTGCCTCCAGGGCAAGGCCGCCTTAAGAATTCAGCGCATCGGGAACGTCCTCTCCGTGGCCAGCCCGTC
CGACGCCACCTTGCCCTCATCTTGCCTCCAAGCCATGGAGTCCGGCACCCTGACCCTGGACACCCAAAGCGTGGACTGCA
CCTTCACCCATCTGGACGGAAGCCGGGGAGGGTTCAGGTACACCTACACGGGCGACAAGAAGAGCGGGCAGGGGCTTTTG
GAGGTCTTCGGCGACGTGGTGCTGGAGGGTATAGACGTGGTGCTCAACCGGCCCGTGGACTATAGGGCCCAGTCGGGGAG
CACCAAGAGCGCCACCCTTGCGGTGCTGAAGCTTTCTGGAAAAGGCGGCAACCTGGACATCAACGGCAACCTCCTCCCCG
ACGCCACCTTTGGCCTCTTCCCCAACCATGCCCTGGGTCTTCTAGCCGAAGGAGACATCTACCAGCGCGGCCAGTACGTG
ATGGCCCCCCTGTACGCCGGGGGCACCTTCCGGGTGGTGAAGGACAACGTCCTCTTCGGCTCGGTCATTAGCAACCAGTT
CTGCACCACGAGCGCCGGGAACCAAACGCAATGCAACGCCGGCCAAAAGGCCGAGGTGGTCTACATCCGCATCCCCAAGG
AGAACCGCCCCGTGCTCCTGCCGAGCCTCCGCGGGGGGAAGCCCGTCTTCCAGGTGCTCTCCTATGAGCGCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

92.652

100

0.927

Multiple sequence alignment