Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AAVB50_RS14525 Genome accession   NZ_CP154923
Coordinates   2711343..2711774 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain FUA2233     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2706343..2716774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS14515 (AAVB50_14510) hexA 2707826..2710402 (-) 2577 WP_088325891.1 DNA mismatch repair protein MutS Machinery gene
  AAVB50_RS14520 (AAVB50_14515) cotE 2710535..2711080 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  AAVB50_RS14525 (AAVB50_14520) ymcA 2711343..2711774 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AAVB50_RS14530 (AAVB50_14525) miaB 2711776..2713305 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AAVB50_RS14535 (AAVB50_14530) kbl 2713453..2714631 (-) 1179 WP_014664025.1 glycine C-acetyltransferase -
  AAVB50_RS14540 (AAVB50_14535) tdh 2714644..2715687 (-) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  AAVB50_RS14545 (AAVB50_14540) spoVS 2715953..2716213 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=895284 AAVB50_RS14525 WP_003231834.1 2711343..2711774(-) (ymcA) [Bacillus subtilis strain FUA2233]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=895284 AAVB50_RS14525 WP_003231834.1 2711343..2711774(-) (ymcA) [Bacillus subtilis strain FUA2233]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1