Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   R4710_RS03285 Genome accession   NZ_CP137101
Coordinates   634006..634665 (+) Length   219 a.a.
NCBI ID   WP_000565004.1    Uniprot ID   A0AA95DDC2
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629006..639665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS03265 - 629643..630539 (-) 897 WP_000825665.1 PEP phosphonomutase -
  R4710_RS03270 - 630542..631804 (-) 1263 WP_000413347.1 PTS sugar transporter subunit IIC -
  R4710_RS03275 - 632084..633262 (+) 1179 WP_000175876.1 ROK family transcriptional regulator -
  R4710_RS03280 - 633490..633936 (-) 447 WP_050214587.1 GNAT family N-acetyltransferase -
  R4710_RS03285 cclA/cilC 634006..634665 (+) 660 WP_000565004.1 A24 family peptidase Machinery gene
  R4710_RS03290 trpA 634637..635413 (-) 777 WP_050245225.1 tryptophan synthase subunit alpha -
  R4710_RS03295 trpB 635406..636629 (-) 1224 WP_000331289.1 tryptophan synthase subunit beta -
  R4710_RS03300 - 636607..637206 (-) 600 WP_050245227.1 phosphoribosylanthranilate isomerase -
  R4710_RS03305 trpC 637193..637960 (-) 768 WP_000076548.1 indole-3-glycerol phosphate synthase TrpC -
  R4710_RS03310 trpD 637957..638961 (-) 1005 WP_000658716.1 anthranilate phosphoribosyltransferase -
  R4710_RS03315 - 638972..639538 (-) 567 WP_000601925.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24842.93 Da        Isoelectric Point: 7.6165

>NTDB_id=895157 R4710_RS03285 WP_000565004.1 634006..634665(+) (cclA/cilC) [Streptococcus pneumoniae strain 16P2012-2]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSASHCDSCQTPLRPLDLIPILSQVFNRFRCRYCKVRYPVWYALFELSLG
LLFLLYSWGWLSLGQVVLITAGLTLGIYDFHHQEYPLLVWMTFQLILIASSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFLLQKKKERLPFVPFLLLATCLIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=895157 R4710_RS03285 WP_000565004.1 634006..634665(+) (cclA/cilC) [Streptococcus pneumoniae strain 16P2012-2]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGCCAGTCACTGCGATTCCTGTCAGACTCCCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTCGCTGTCGCTACTGCAAAGTTCGCTATCCTGTCTGGTATGCCCTCTTTGAATTAAGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGGATGGCTCTCCTTGGGGCAAGTCGTCCTAATCACCGCTGGTTTGACCTTGGGTAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCAGCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGTGCAGGGGATTTCCTC
TTTTTAGCTTCTTGTGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGTATCCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTACTGCTTGTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

100

100

1
  cclA/cilC Streptococcus pneumoniae Rx1

94.977

100

0.95
  cclA/cilC Streptococcus pneumoniae D39

94.977

100

0.95
  cclA/cilC Streptococcus pneumoniae R6

94.977

100

0.95
  cclA/cilC Streptococcus mitis SK321

91.781

100

0.918
  cclA/cilC Streptococcus mitis NCTC 12261

87.215

100

0.872