Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVB74_RS17135 Genome accession   NZ_CP154920
Coordinates   3230210..3231346 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2232     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3225210..3236346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS17095 (AAVB74_17095) xre 3225545..3225886 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  AAVB74_RS17100 (AAVB74_17100) xkdA 3226049..3226645 (+) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  AAVB74_RS17105 (AAVB74_17105) xpdC 3226689..3227525 (-) 837 WP_003245071.1 manganese catalase family protein -
  AAVB74_RS17110 (AAVB74_17110) pghB 3227601..3228203 (-) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  AAVB74_RS17115 (AAVB74_17115) yjqA 3228308..3228685 (+) 378 WP_345806514.1 PH domain-containing protein -
  AAVB74_RS17120 (AAVB74_17120) xlyB 3228725..3229678 (-) 954 WP_134982734.1 N-acetylmuramoyl-L-alanine amidase -
  AAVB74_RS17125 (AAVB74_17125) yjpA 3229799..3230056 (+) 258 WP_024572656.1 YciI family protein -
  AAVB74_RS17130 (AAVB74_17130) phrA 3230086..3230220 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AAVB74_RS17135 (AAVB74_17135) rapC 3230210..3231346 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  AAVB74_RS17140 (AAVB74_17140) yjoB 3231492..3232763 (-) 1272 WP_345806426.1 ATPase YjoB -
  AAVB74_RS17145 (AAVB74_17145) yjoA 3232912..3233376 (+) 465 WP_014479541.1 DinB family protein -
  AAVB74_RS17150 (AAVB74_17150) yjnA 3233602..3234366 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  AAVB74_RS17155 (AAVB74_17155) uxaA 3234407..3235900 (-) 1494 WP_345806427.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=895157 AAVB74_RS17135 WP_015252291.1 3230210..3231346(-) (rapC) [Bacillus subtilis strain FUA2232]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=895157 AAVB74_RS17135 WP_015252291.1 3230210..3231346(-) (rapC) [Bacillus subtilis strain FUA2232]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418