Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4703_RS10735 Genome accession   NZ_CP137100
Coordinates   2003951..2004904 (+) Length   317 a.a.
NCBI ID   WP_000495910.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LYP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998951..2009904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS10710 rpmG 1999694..1999843 (+) 150 WP_001809104.1 50S ribosomal protein L33 -
  R4703_RS10715 secG 1999883..2000116 (+) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4703_RS10720 rnr 2000218..2002572 (+) 2355 WP_050200982.1 ribonuclease R -
  R4703_RS10725 smpB 2002535..2003002 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4703_RS10730 tehB 2003018..2003878 (+) 861 WP_000413763.1 SAM-dependent methyltransferase TehB -
  R4703_RS10735 coiA 2003951..2004904 (+) 954 WP_000495910.1 competence protein CoiA Machinery gene
  R4703_RS10740 pepF 2004923..2006725 (+) 1803 WP_000244133.1 oligoendopeptidase F Regulator
  R4703_RS10745 - 2006727..2007440 (+) 714 WP_001812425.1 O-methyltransferase -
  R4703_RS10750 prsA 2007507..2008448 (+) 942 WP_000727952.1 peptidylprolyl isomerase PrsA -
  R4703_RS10755 - 2008567..2008896 (-) 330 Protein_2079 transposase -
  R4703_RS10760 - 2009319..2009414 (+) 96 Protein_2080 IS630 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38269.90 Da        Isoelectric Point: 8.9763

>NTDB_id=895142 R4703_RS10735 WP_000495910.1 2003951..2004904(+) (coiA) [Streptococcus pneumoniae strain LYP]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQYFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895142 R4703_RS10735 WP_000495910.1 2003951..2004904(+) (coiA) [Streptococcus pneumoniae strain LYP]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGATATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGTACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.685

100

0.997
  coiA Streptococcus pneumoniae Rx1

99.054

100

0.991
  coiA Streptococcus pneumoniae D39

99.054

100

0.991
  coiA Streptococcus pneumoniae R6

99.054

100

0.991
  coiA Streptococcus mitis NCTC 12261

89.59

100

0.896
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435