Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4714_RS10120 Genome accession   NZ_CP137099
Coordinates   1927101..1928054 (+) Length   317 a.a.
NCBI ID   WP_000495922.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20824-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922101..1933054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS10095 rpmG 1922844..1922993 (+) 150 WP_001809104.1 50S ribosomal protein L33 -
  R4714_RS10100 secG 1923033..1923266 (+) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4714_RS10105 rnr 1923368..1925722 (+) 2355 WP_219576872.1 ribonuclease R -
  R4714_RS10110 smpB 1925685..1926152 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4714_RS10115 tehB 1926168..1927028 (+) 861 WP_000413761.1 SAM-dependent methyltransferase TehB -
  R4714_RS10120 coiA 1927101..1928054 (+) 954 WP_000495922.1 competence protein CoiA Machinery gene
  R4714_RS10125 pepF 1928072..1929874 (+) 1803 WP_000244144.1 oligoendopeptidase F Regulator
  R4714_RS10130 - 1929876..1930589 (+) 714 WP_000230401.1 O-methyltransferase -
  R4714_RS10135 prsA 1930656..1931597 (+) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  R4714_RS10140 - 1931716..1932057 (-) 342 Protein_1953 transposase -
  R4714_RS10145 - 1932471..1932566 (+) 96 Protein_1954 IS630 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38278.91 Da        Isoelectric Point: 9.1156

>NTDB_id=895060 R4714_RS10120 WP_000495922.1 1927101..1928054(+) (coiA) [Streptococcus pneumoniae strain 20824-4]
MFVARDTRGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHIANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYRNFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895060 R4714_RS10120 WP_000495922.1 1927101..1928054(+) (coiA) [Streptococcus pneumoniae strain 20824-4]
ATGTTTGTTGCGAGAGATACTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACATAGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTGTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATTCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCGGAACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

98.423

100

0.984
  coiA Streptococcus pneumoniae Rx1

97.792

100

0.978
  coiA Streptococcus pneumoniae D39

97.792

100

0.978
  coiA Streptococcus pneumoniae R6

97.792

100

0.978
  coiA Streptococcus mitis NCTC 12261

88.644

100

0.886
  coiA Lactococcus lactis subsp. cremoris KW2

42.284

100

0.432