Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R4714_RS05895 Genome accession   NZ_CP137099
Coordinates   1083958..1084194 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20824-4     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078958..1089194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS05890 - 1082920..1083693 (-) 774 Protein_1107 transposase -
  R4714_RS05895 comW 1083958..1084194 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  R4714_RS05900 - 1084425..1085711 (+) 1287 WP_219576890.1 adenylosuccinate synthase -
  R4714_RS05905 tadA 1085912..1086379 (+) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  R4714_RS05915 - 1086565..1087008 (+) 444 WP_000701993.1 dUTP diphosphatase -
  R4714_RS05920 - 1087010..1087525 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  R4714_RS05925 radA 1087539..1088900 (+) 1362 WP_078152438.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=895041 R4714_RS05895 WP_000939546.1 1083958..1084194(+) (comW) [Streptococcus pneumoniae strain 20824-4]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=895041 R4714_RS05895 WP_000939546.1 1083958..1084194(+) (comW) [Streptococcus pneumoniae strain 20824-4]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756