Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   AAYR29_RS01780 Genome accession   NZ_CP154918
Coordinates   313052..313747 (+) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 308052..318747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS01760 (AAYR29_01760) folC 308985..310277 (+) 1293 WP_345806015.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AAYR29_RS01765 (AAYR29_01765) comC 310417..311163 (+) 747 WP_168781167.1 A24 family peptidase Machinery gene
  AAYR29_RS01770 (AAYR29_01770) spoIIB 311296..312294 (+) 999 WP_345806016.1 SPOR domain-containing protein -
  AAYR29_RS01775 (AAYR29_01775) maf 312446..313015 (+) 570 WP_345806017.1 Maf family nucleotide pyrophosphatase -
  AAYR29_RS01780 (AAYR29_01780) ysxA/radC 313052..313747 (+) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  AAYR29_RS01785 (AAYR29_01785) mreB 313839..314852 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AAYR29_RS01790 (AAYR29_01790) mreC 314883..315755 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  AAYR29_RS01795 (AAYR29_01795) mreD 315752..316270 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  AAYR29_RS01800 (AAYR29_01800) minC 316323..317003 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  AAYR29_RS01805 (AAYR29_01805) minD 317005..317811 (+) 807 WP_014664846.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=894910 AAYR29_RS01780 WP_015251546.1 313052..313747(+) (ysxA/radC) [Bacillus subtilis strain FUA2231]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=894910 AAYR29_RS01780 WP_015251546.1 313052..313747(+) (ysxA/radC) [Bacillus subtilis strain FUA2231]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424