Detailed information NTG0089486

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: LDO09_RS07495
• Genome accession: NZ_AP024926
• Coordinates: 1406481..1408754 (+)
• Length: 757 a.a.
• NCBI ID: WP_223968590.1
• Uniprot ID: A0AAD1KUJ4
• Organism: Thermus thermophilus strain AA1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1401481..1413754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO09_RS07465 (TthAA11_14720)	-	1401592..1402083 (+)	492	WP_011173430.1	DUF5317 domain-containing protein	-
LDO09_RS07470 (TthAA11_14730)	-	1402138..1403142 (+)	1005	WP_223965607.1	homoisocitrate dehydrogenase	-
LDO09_RS07475 (TthAA11_14740)	pilM	1403277..1404410 (+)	1134	WP_143586068.1	type IV pilus assembly protein PilM	Machinery gene
LDO09_RS07480 (TthAA11_14750)	pilN	1404403..1405026 (+)	624	WP_011228637.1	competence protein	Machinery gene
LDO09_RS07485 (TthAA11_14760)	pilO	1405016..1405597 (+)	582	WP_143586070.1	type 4a pilus biogenesis protein PilO	Machinery gene
LDO09_RS07490 (TthAA11_14770)	pilW	1405594..1406484 (+)	891	WP_223968588.1	competence protein	Machinery gene
LDO09_RS07495 (TthAA11_14780)	pilQ	1406481..1408754 (+)	2274	WP_223968590.1	secretin N-terminal domain-containing protein	Machinery gene
LDO09_RS07500 (TthAA11_14790)	aroC	1408813..1409964 (+)	1152	WP_143586076.1	chorismate synthase	-
LDO09_RS07505 (TthAA11_14800)	-	1409989..1410543 (+)	555	WP_008632876.1	shikimate kinase	-
LDO09_RS07510 (TthAA11_14810)	-	1410521..1411567 (+)	1047	WP_223965609.1	3-dehydroquinate synthase family protein	-
LDO09_RS07515 (TthAA11_14820)	rsmF	1411613..1412983 (-)	1371	WP_223965610.1	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
LDO09_RS07520 (TthAA11_14830)	acpS	1413036..1413413 (+)	378	WP_143586084.1	holo-ACP synthase	-
LDO09_RS07525 (TthAA11_14840)	-	1413391..1413744 (-)	354	WP_143586086.1	DUF4870 domain-containing protein	-

Sequence

Protein

• Length: 757 a.a.
• Molecular weight: 82835.89 Da
• Isoelectric Point: 5.2215

>NTDB_id=89486 LDO09_RS07495 WP_223968590.1 1406481..1408754(+) (pilQ) [Thermus thermophilus strain AA1-1]
MKSAWIRAAVIALAGLGAFALAGSFPEEPRFQAPVNLKVSESQVKAGQTLPLDVVLEALARSVGLQPLIYRAYDTSGDPA
KAQPPLPNIKLDFQGKPFREVWDLLFTTYGNQYGLDYLFLPPDVVVVAPTQVITALVDAPSRTGAMERRPYIVGIPEIAY
KRTETDAQGQTRNVVNIEGAKAWVQNDLLPFLSREAAGLNVNWIVVEEGGRLKAVLSVLATPEQHARFSDILQRAGIDFR
PLPALAQPKPRVEKTYTLTYATFPDLLAFLQSRLPEAQISVVPTNPQRAIVLATEEDHARLSELLKTADVPKTVRRVYAL
QNLTFREAQERLKPLLEKDLKGARLESLPGNPKALLLEAPEAEHALFAEILKALDVPPQAPEAPQEATLRRLYPLRYANA
EQVAPFLAREVPGIVVQTVPGQPVLSVRGTEAQLREVESLLAQIDRPPEQGPPVFQRAYQLSNAKAVELAQVLQEALKAR
QAQNQGQQNQALPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVPQVNLRVRIQEVQSNLTRSLGLKWNSIAG
GNVAASILDSGLSLIFDSTRSLAALNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVEGNVERVPFD
IGLIVEVTPQITADGQILLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGGLTSQESNQSQQGVPLLMD
IPLIGELFKQRTNESTDKELLVVITADILKETASANP

Nucleotide

• Length: 2274 bp

>NTDB_id=89486 LDO09_RS07495 WP_223968590.1 1406481..1408754(+) (pilQ) [Thermus thermophilus strain AA1-1]
ATGAAGAGCGCGTGGATCCGTGCGGCCGTGATCGCCCTCGCAGGGCTAGGGGCTTTTGCCCTTGCGGGGAGCTTTCCCGA
GGAGCCCCGCTTCCAGGCCCCGGTGAACCTCAAGGTCTCGGAATCCCAGGTCAAGGCGGGCCAGACCCTGCCCCTGGACG
TGGTCCTCGAGGCCCTGGCGCGAAGCGTGGGGCTCCAGCCCCTCATCTACCGGGCCTACGATACAAGCGGGGACCCCGCC
AAGGCCCAGCCCCCCCTGCCCAACATCAAGCTGGACTTCCAGGGCAAGCCCTTCCGGGAGGTCTGGGACCTCCTCTTCAC
CACCTACGGCAACCAGTACGGCCTGGACTACCTCTTCCTGCCCCCCGACGTGGTGGTGGTGGCCCCCACCCAGGTGATCA
CCGCCCTGGTGGACGCCCCGAGCCGCACGGGGGCCATGGAGCGCAGGCCCTACATCGTGGGCATCCCCGAGATCGCCTAC
AAGCGCACGGAGACGGATGCCCAGGGCCAGACCCGCAACGTGGTCAACATTGAGGGCGCCAAGGCCTGGGTCCAGAACGA
CCTCCTCCCCTTCCTCTCCCGGGAGGCCGCGGGGCTCAACGTGAACTGGATCGTGGTGGAGGAGGGCGGGAGGCTCAAGG
CCGTCCTCTCCGTTCTCGCCACCCCCGAGCAACACGCCCGCTTCTCCGACATCCTGCAGCGGGCCGGGATTGACTTCCGC
CCCCTCCCCGCCCTGGCCCAGCCCAAGCCCCGGGTGGAGAAGACCTACACCCTCACCTACGCCACCTTCCCCGACCTCCT
CGCCTTCCTCCAGTCCCGCCTCCCCGAGGCCCAGATCAGCGTGGTCCCCACCAACCCCCAAAGGGCCATCGTCCTCGCCA
CCGAGGAGGACCACGCCCGCTTGAGCGAGCTTCTGAAGACGGCCGACGTCCCCAAGACCGTCCGCCGGGTCTACGCCCTG
CAGAACCTCACCTTCAGGGAGGCCCAGGAGCGCCTAAAGCCCCTCCTGGAGAAGGACCTCAAGGGGGCCCGCCTGGAGAG
CCTCCCCGGCAACCCCAAGGCCCTCCTCCTCGAGGCCCCCGAGGCGGAGCACGCCCTCTTCGCCGAGATCCTGAAGGCCC
TGGACGTCCCCCCCCAGGCCCCCGAAGCCCCCCAGGAGGCCACCTTGCGGCGCCTCTACCCCCTGCGCTACGCCAACGCC
GAGCAGGTGGCCCCCTTCCTCGCCCGGGAGGTGCCGGGGATCGTGGTCCAGACCGTCCCCGGCCAACCCGTCCTCTCGGT
GCGGGGCACGGAAGCGCAGCTTAGGGAGGTGGAAAGCCTCCTCGCCCAGATTGACCGCCCCCCGGAGCAGGGCCCTCCCG
TGTTCCAGCGGGCCTACCAGCTCTCCAACGCCAAGGCGGTGGAGCTCGCCCAGGTGCTCCAGGAGGCGCTCAAGGCCCGG
CAGGCCCAGAACCAGGGCCAGCAGAACCAGGCCCTCCCCACCCGGGAGGCCACGGTGGTGGCCGACCCCAGGACCAACAC
CCTCATCGTCACCGGCACCCAGGAGGACCTCGCCCTGGTGGAGGGCCTCATCCCCAAGCTGGACCAGCCCGTGCCCCAGG
TGAACCTCAGGGTGCGCATCCAGGAGGTCCAGTCCAACCTGACCCGTAGCCTCGGCCTCAAGTGGAACAGCATCGCCGGC
GGCAACGTGGCGGCCAGCATCCTGGACTCGGGCCTTTCCCTCATCTTTGACTCCACGCGAAGCCTCGCCGCCCTCAACAT
CATGGCCACCCTGGACGCCCTGCAGCAACAGGGCCTCTCCCGGGCCCTCCGGGACGTGAACCAGACCGTCCTCAACAACC
AGACCGCCCGCCTGCAGTCCGGCGAGACCTTCTTCATCCGGCGGGTGGTGGAGGGGAACGTGGAGCGGGTGCCCTTTGAC
ATCGGCCTCATCGTGGAGGTCACGCCCCAGATCACCGCCGACGGCCAGATCCTCCTCAACATCAGGGCCGAGGTCTCGGG
GAACGTCCAGCGCAACCCCGTGGACGGGGACGTGGACCGCTTCACCAAGCAGGTGGTGACCACCACCCTAAGGGTCAAAG
ACGGGGAGACCGTGGTCCTCGGGGGCCTCACCTCCCAGGAGTCCAACCAGAGCCAGCAGGGGGTGCCCCTCCTCATGGAC
ATCCCCCTGATCGGCGAGCTCTTCAAGCAGCGGACGAACGAGAGCACCGACAAGGAGCTTCTGGTGGTGATCACCGCCGA
CATCCTCAAGGAGACGGCCTCGGCGAACCCCTAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (457-533)

• Bacterial type II/III secretion system short domain (Secretin_N) (391-450)

• Bacterial type II and III secretion system protein (Secretin) (593-750)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Thermus thermophilus HB27	97.226	100	0.972