Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | LDO09_RS07480 | Genome accession | NZ_AP024926 |
| Coordinates | 1404403..1405026 (+) | Length | 207 a.a. |
| NCBI ID | WP_011228637.1 | Uniprot ID | A0A3P4AP50 |
| Organism | Thermus thermophilus strain AA1-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1399403..1410026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO09_RS07460 (TthAA11_14710) | - | 1400105..1401541 (+) | 1437 | WP_223965606.1 | HD domain-containing phosphohydrolase | - |
| LDO09_RS07465 (TthAA11_14720) | - | 1401592..1402083 (+) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
| LDO09_RS07470 (TthAA11_14730) | - | 1402138..1403142 (+) | 1005 | WP_223965607.1 | homoisocitrate dehydrogenase | - |
| LDO09_RS07475 (TthAA11_14740) | pilM | 1403277..1404410 (+) | 1134 | WP_143586068.1 | type IV pilus assembly protein PilM | Machinery gene |
| LDO09_RS07480 (TthAA11_14750) | pilN | 1404403..1405026 (+) | 624 | WP_011228637.1 | competence protein | Machinery gene |
| LDO09_RS07485 (TthAA11_14760) | pilO | 1405016..1405597 (+) | 582 | WP_143586070.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| LDO09_RS07490 (TthAA11_14770) | pilW | 1405594..1406484 (+) | 891 | WP_223968588.1 | competence protein | Machinery gene |
| LDO09_RS07495 (TthAA11_14780) | pilQ | 1406481..1408754 (+) | 2274 | WP_223968590.1 | secretin N-terminal domain-containing protein | Machinery gene |
| LDO09_RS07500 (TthAA11_14790) | aroC | 1408813..1409964 (+) | 1152 | WP_143586076.1 | chorismate synthase | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23063.56 Da Isoelectric Point: 9.7530
>NTDB_id=89483 LDO09_RS07480 WP_011228637.1 1404403..1405026(+) (pilN) [Thermus thermophilus strain AA1-1]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
Nucleotide
Download Length: 624 bp
>NTDB_id=89483 LDO09_RS07480 WP_011228637.1 1404403..1405026(+) (pilN) [Thermus thermophilus strain AA1-1]
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCTTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAAGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAGGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCTTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAAGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAGGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
99.517 |
100 |
0.995 |