Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABK24_RS01825 Genome accession   NZ_AP027713
Coordinates   401223..401900 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain PSS-16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396223..406900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK24_RS01810 (VEE25_03560) chiA 397590..400283 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  AABK24_RS01815 (VEE25_03570) bfd 400452..400646 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  AABK24_RS01820 (VEE25_03580) bfr 400718..401194 (+) 477 WP_000675504.1 bacterioferritin -
  AABK24_RS01825 (VEE25_03590) pilD 401223..401900 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  AABK24_RS01830 (VEE25_03600) gspM 401900..402361 (-) 462 WP_338386141.1 type II secretion system protein GspM -
  AABK24_RS01835 gspL 402358..403521 (-) 1164 Protein_363 type II secretion system protein GspL -
  AABK24_RS01840 (VEE25_03630) gspK 403536..404519 (-) 984 WP_172410671.1 type II secretion system minor pseudopilin GspK -
  AABK24_RS01845 (VEE25_03640) gspJ 404512..405099 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  AABK24_RS01850 (VEE25_03650) gspI 405092..405469 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  AABK24_RS01855 (VEE25_03660) gspH 405466..405975 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  AABK24_RS01860 (VEE25_03670) gspG 405983..406420 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=89483 AABK24_RS01825 WP_000178161.1 401223..401900(-) (pilD) [Escherichia coli strain PSS-16]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=89483 AABK24_RS01825 WP_000178161.1 401223..401900(-) (pilD) [Escherichia coli strain PSS-16]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378

Multiple sequence alignment