Detailed information NTG0089482

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: LDO09_RS07475
• Genome accession: NZ_AP024926
• Coordinates: 1403277..1404410 (+)
• Length: 377 a.a.
• NCBI ID: WP_143586068.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1398277..1409410

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO09_RS07455 (TthAA11_14700)	-	1399156..1400001 (+)	846	WP_223965605.1	transposase	-
LDO09_RS07460 (TthAA11_14710)	-	1400105..1401541 (+)	1437	WP_223965606.1	HD domain-containing phosphohydrolase	-
LDO09_RS07465 (TthAA11_14720)	-	1401592..1402083 (+)	492	WP_011173430.1	DUF5317 domain-containing protein	-
LDO09_RS07470 (TthAA11_14730)	-	1402138..1403142 (+)	1005	WP_223965607.1	homoisocitrate dehydrogenase	-
LDO09_RS07475 (TthAA11_14740)	pilM	1403277..1404410 (+)	1134	WP_143586068.1	type IV pilus assembly protein PilM	Machinery gene
LDO09_RS07480 (TthAA11_14750)	pilN	1404403..1405026 (+)	624	WP_011228637.1	competence protein	Machinery gene
LDO09_RS07485 (TthAA11_14760)	pilO	1405016..1405597 (+)	582	WP_143586070.1	type 4a pilus biogenesis protein PilO	Machinery gene
LDO09_RS07490 (TthAA11_14770)	pilW	1405594..1406484 (+)	891	WP_223968588.1	competence protein	Machinery gene
LDO09_RS07495 (TthAA11_14780)	pilQ	1406481..1408754 (+)	2274	WP_223968590.1	secretin N-terminal domain-containing protein	Machinery gene

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41334.90 Da
• Isoelectric Point: 4.3805

>NTDB_id=89482 LDO09_RS07475 WP_143586068.1 1403277..1404410(+) (pilM) [Thermus thermophilus strain AA1-1]
MFKSLSQLFRPRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLVEGMVAEPAALAQEIKELLLEARTRKRYVV
TALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEAL
RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLA
AEEVKRTYGMATIPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR
GLASLLTDTLGVNFEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEPLD

Nucleotide

• Length: 1134 bp

>NTDB_id=89482 LDO09_RS07475 WP_143586068.1 1403277..1404410(+) (pilM) [Thermus thermophilus strain AA1-1]
GTGTTCAAAAGCCTTAGCCAGCTCTTCCGACCCAGGGTTGAGGCCCTGGGGTTGGAGATCGGGGCCTCCGCCCTGAAGCT
CGTGGAGGTGTCCGGGAACCCCCCTGCCCTCAAGGCCCTGGCCTCCCGCCCCACCCCGCCCGGCCTCCTGGTGGAAGGGA
TGGTGGCCGAGCCTGCCGCGTTGGCCCAGGAGATCAAGGAGCTTCTCCTCGAGGCCCGCACCCGCAAGCGCTACGTGGTC
ACCGCCCTCTCCAACCTGGCGGTGATCCTCCGCCCCATCCAGGTCCCCAAGATGCCCCTCAAGGAGATGGAGGAGGCGGT
GCGCTGGGAGGCGGAGCGCTACATTCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCCCCCCTGACCCCCCTCTCCG
AGGTGCAGGAGGGGGAGCAGGTCCAGGTGATGGTGGCGGCGGCGCGGCAGGAGGCGGTGGCGGGGGTCCTCGAGGCCCTG
AGGGGGGCGGGGCTCGTCCCCGTGGTGCTGGACGTGAAGCCCTTCGCCGGGCTTTACCCTCTGGAGGCCAGGCTTGCGGA
GGAGCCCGACCGGGTCTTCCTCGTCCTGGACATCGGGGCCGAAAGCACGAGCCTCGTCCTGCTCCGGGGGGACAAGCCCC
TGGCGGTGCGCGTCCTCACCCTCTCGGGCAAGGACTTCACCGAAGCCATCGCCCGAAGCTTCAACCTGGACCTCCTCGCC
GCCGAGGAGGTGAAGCGGACCTACGGGATGGCCACCATCCCCACCGAGGACGAGGAACTCCTCCTGGACTTTGACGCCGA
GCGGGAGCGCTACAGCCCGGGGCGCATCTACGACGCCATCCGCCCGGTGCTGGTGGAACTCACCCAGGAGCTCCGCCGTA
GCCTGGAGTTCTTCCGCATCCAGCTGGAGGAGGCCTCGCCCGAGGTGGGCTACCTCCTGGGCGGGGGGAGCAAGCTCAGG
GGGCTCGCCTCCCTCCTCACCGACACCCTGGGGGTGAACTTTGAGCCCGTCAACCCCTGGGAGGCGGTGGCGGTGGACCC
CAAGCGCTTTGAGTCGGAGCAACTCCAGGAGATCGGGCCGGAGTTCGCCGTGGCCCTGGGCTTGGCGTTGAGGGGGGTGG
AGCCCCTTGATTAG

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (17-372)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Thermus thermophilus HB27	99.204	100	0.992