Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   LDO09_RS07490 Genome accession   NZ_AP024926
Coordinates   1405594..1406484 (+) Length   296 a.a.
NCBI ID   WP_223968588.1    Uniprot ID   A0AAD1NYS6
Organism   Thermus thermophilus strain AA1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400594..1411484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO09_RS07465 (TthAA11_14720) - 1401592..1402083 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  LDO09_RS07470 (TthAA11_14730) - 1402138..1403142 (+) 1005 WP_223965607.1 homoisocitrate dehydrogenase -
  LDO09_RS07475 (TthAA11_14740) pilM 1403277..1404410 (+) 1134 WP_143586068.1 type IV pilus assembly protein PilM Machinery gene
  LDO09_RS07480 (TthAA11_14750) pilN 1404403..1405026 (+) 624 WP_011228637.1 competence protein Machinery gene
  LDO09_RS07485 (TthAA11_14760) pilO 1405016..1405597 (+) 582 WP_143586070.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO09_RS07490 (TthAA11_14770) pilW 1405594..1406484 (+) 891 WP_223968588.1 competence protein Machinery gene
  LDO09_RS07495 (TthAA11_14780) pilQ 1406481..1408754 (+) 2274 WP_223968590.1 secretin N-terminal domain-containing protein Machinery gene
  LDO09_RS07500 (TthAA11_14790) aroC 1408813..1409964 (+) 1152 WP_143586076.1 chorismate synthase -
  LDO09_RS07505 (TthAA11_14800) - 1409989..1410543 (+) 555 WP_008632876.1 shikimate kinase -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 30196.65 Da        Isoelectric Point: 4.5062

>NTDB_id=89485 LDO09_RS07490 WP_223968588.1 1405594..1406484(+) (pilW) [Thermus thermophilus strain AA1-1]
MKNAWQRLKEAWENLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAETPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEQAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASSASRPAPVPEGPAVRVQTPAPAPQAAPATRP
IPGTSGALPAPKVLSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEAEAPTPASPLERLVAEKGLRLSGTLLGP
VSVAILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLSLSLVQAGGGQ

Nucleotide


Download         Length: 891 bp        

>NTDB_id=89485 LDO09_RS07490 WP_223968588.1 1405594..1406484(+) (pilW) [Thermus thermophilus strain AA1-1]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGAAAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAACGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAAGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGCAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAATCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCTCCGCCTCCCGCC
CGGCGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCCGCCCCAGCCCCCCAGGCGGCCCCCGCCACCCGGCCC
ATCCCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGA
AACGCCGCCTAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAAGGGGCGGAGGCGG
AGGCCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCC
GTGAGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTGGTCCCTGCGGGAAGCCCCATCCCCGGCACGGAGGCCGT
GGTGCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAGCCTGTCCCTCGTCCAAGCTGGAG
GTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

95.608

100

0.956

Multiple sequence alignment