Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   AAVC70_RS06170 Genome accession   NZ_CP154898
Coordinates   1000112..1000987 (-) Length   291 a.a.
NCBI ID   WP_013353397.1    Uniprot ID   A0A9P1JJW3
Organism   Bacillus amyloliquefaciens strain Fad 97     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 995112..1005987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC70_RS06145 (AAVC70_06145) comA 995495..996139 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  AAVC70_RS06150 (AAVC70_06150) - 996220..998232 (-) 2013 Protein_1085 histidine kinase -
  AAVC70_RS06160 (AAVC70_06160) comP 999592..999894 (-) 303 WP_345816382.1 hypothetical protein Regulator
  AAVC70_RS06165 (AAVC70_06165) comX 999917..1000093 (-) 177 WP_013353396.1 competence pheromone ComX -
  AAVC70_RS06170 (AAVC70_06170) comQ 1000112..1000987 (-) 876 WP_013353397.1 polyprenyl synthetase family protein Regulator
  AAVC70_RS06175 (AAVC70_06175) degQ 1001139..1001279 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  AAVC70_RS06180 (AAVC70_06180) - 1001744..1002085 (+) 342 WP_013353399.1 hypothetical protein -
  AAVC70_RS06185 (AAVC70_06185) - 1002092..1003315 (-) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -
  AAVC70_RS06190 (AAVC70_06190) - 1003445..1004911 (-) 1467 WP_014472199.1 nicotinate phosphoribosyltransferase -
  AAVC70_RS06195 (AAVC70_06195) - 1004929..1005480 (-) 552 WP_013353402.1 isochorismatase family cysteine hydrolase -
  AAVC70_RS06200 (AAVC70_06200) - 1005561..1005956 (-) 396 WP_013353403.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33461.48 Da        Isoelectric Point: 5.9224

>NTDB_id=894656 AAVC70_RS06170 WP_013353397.1 1000112..1000987(-) (comQ) [Bacillus amyloliquefaciens strain Fad 97]
MCLDAETIKGKMKEIVGDKVDNLHLEETLLTFINEKKHFSFGVLAFQHYVAFKGTHSSEITLLAAGIELLILAFDIFDDI
EDEDNFNKAWMQTDHAISLNAATSLYSISLQAICELESNIDFSRLAIKYALNAMQGQHNDLRNFPETEEECLHMIKQKSG
SLTAMSAVLGAMLASGEFNATIENYSYKIGVIKQIENDYYGLFDKSRSDIKKKKRTLINLFLNRQFNSASKKVLNMMNSK
NSYYSLISDRNYFEELLCKAGVRQYVLMLIKIYENEIYNEMEKLNIRIKLW

Nucleotide


Download         Length: 876 bp        

>NTDB_id=894656 AAVC70_RS06170 WP_013353397.1 1000112..1000987(-) (comQ) [Bacillus amyloliquefaciens strain Fad 97]
ATGTGTTTAGATGCCGAAACGATTAAAGGGAAGATGAAGGAAATTGTTGGGGATAAAGTCGATAATCTACATTTAGAAGA
GACTCTTTTGACCTTCATTAATGAAAAGAAGCACTTTTCATTCGGTGTCCTTGCTTTCCAGCATTATGTTGCTTTTAAGG
GTACACATTCCTCGGAAATCACACTACTGGCCGCTGGAATTGAACTTTTAATTTTAGCTTTTGATATTTTTGACGATATT
GAAGATGAAGATAACTTTAATAAGGCATGGATGCAAACTGACCATGCTATATCCCTGAATGCGGCTACTTCTCTGTATTC
AATAAGCCTGCAAGCCATTTGTGAGCTTGAATCAAACATCGATTTTTCAAGACTTGCAATAAAATATGCCCTAAATGCAA
TGCAAGGTCAGCATAATGATCTAAGAAATTTCCCGGAGACTGAAGAAGAGTGTTTACATATGATAAAACAGAAATCAGGA
TCGTTAACTGCAATGTCAGCTGTTTTAGGGGCGATGCTTGCAAGTGGTGAATTTAACGCAACAATTGAGAATTATTCTTA
TAAAATTGGCGTTATTAAACAAATTGAAAATGACTATTATGGTTTATTTGATAAAAGCCGTAGTGATATAAAGAAGAAGA
AAAGAACTTTGATAAACTTGTTTTTAAATCGTCAGTTTAATAGTGCCTCAAAAAAAGTTTTAAATATGATGAATTCTAAA
AACAGCTATTACTCTCTCATATCGGACAGAAATTATTTTGAAGAATTGCTGTGTAAAGCAGGAGTCAGACAATATGTTTT
AATGTTAATTAAAATATATGAAAATGAAATTTATAACGAAATGGAAAAGTTGAACATAAGAATTAAACTATGGTGA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(44-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

46.182

94.502

0.436