Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   AAVC70_RS06160 Genome accession   NZ_CP154898
Coordinates   999592..999894 (-) Length   100 a.a.
NCBI ID   WP_345816382.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 97     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 994592..1004894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC70_RS06135 (AAVC70_06135) mnhG 994676..995050 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  AAVC70_RS06140 (AAVC70_06140) - 995090..995473 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  AAVC70_RS06145 (AAVC70_06145) comA 995495..996139 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  AAVC70_RS06150 (AAVC70_06150) - 996220..998232 (-) 2013 Protein_1085 histidine kinase -
  AAVC70_RS06160 (AAVC70_06160) comP 999592..999894 (-) 303 WP_345816382.1 hypothetical protein Regulator
  AAVC70_RS06165 (AAVC70_06165) comX 999917..1000093 (-) 177 WP_013353396.1 competence pheromone ComX -
  AAVC70_RS06170 (AAVC70_06170) comQ 1000112..1000987 (-) 876 WP_013353397.1 polyprenyl synthetase family protein Regulator
  AAVC70_RS06175 (AAVC70_06175) degQ 1001139..1001279 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  AAVC70_RS06180 (AAVC70_06180) - 1001744..1002085 (+) 342 WP_013353399.1 hypothetical protein -
  AAVC70_RS06185 (AAVC70_06185) - 1002092..1003315 (-) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11646.73 Da        Isoelectric Point: 10.2370

>NTDB_id=894655 AAVC70_RS06160 WP_345816382.1 999592..999894(-) (comP) [Bacillus amyloliquefaciens strain Fad 97]
MRYFIKHLSIALLIFSFFYIAHIIYFTQNGILVGTYVVETSKHEFEVVKITKSSYGRYLNLKEGDKILQINGHMPSSQNI
KNGYLAKANNLKVERRMMLV

Nucleotide


Download         Length: 303 bp        

>NTDB_id=894655 AAVC70_RS06160 WP_345816382.1 999592..999894(-) (comP) [Bacillus amyloliquefaciens strain Fad 97]
TTGAGGTATTTTATTAAGCATCTTTCAATCGCACTGTTGATATTTAGTTTTTTCTATATTGCACATATTATATACTTTAC
CCAGAATGGAATTTTAGTCGGAACCTATGTTGTTGAAACATCAAAACATGAGTTTGAAGTTGTTAAAATTACAAAATCTT
CTTACGGAAGATACTTGAATTTAAAAGAAGGGGACAAAATTCTACAGATAAATGGGCACATGCCTTCTTCTCAAAATATC
AAAAATGGTTATTTAGCAAAGGCTAATAACTTAAAGGTTGAGAGACGTATGATGCTAGTATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

38.947

95

0.37