Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAVC70_RS06145 Genome accession   NZ_CP154898
Coordinates   995495..996139 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 97     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 990495..1001139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC70_RS06110 (AAVC70_06110) - 991680..992111 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  AAVC70_RS06115 (AAVC70_06115) - 992111..992452 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  AAVC70_RS06120 (AAVC70_06120) - 992445..993926 (+) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  AAVC70_RS06125 (AAVC70_06125) - 993932..994408 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  AAVC70_RS06130 (AAVC70_06130) - 994408..994692 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  AAVC70_RS06135 (AAVC70_06135) mnhG 994676..995050 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  AAVC70_RS06140 (AAVC70_06140) - 995090..995473 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  AAVC70_RS06145 (AAVC70_06145) comA 995495..996139 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  AAVC70_RS06150 (AAVC70_06150) - 996220..998232 (-) 2013 Protein_1085 histidine kinase -
  AAVC70_RS06160 (AAVC70_06160) comP 999592..999894 (-) 303 WP_345816382.1 hypothetical protein Regulator
  AAVC70_RS06165 (AAVC70_06165) comX 999917..1000093 (-) 177 WP_013353396.1 competence pheromone ComX -
  AAVC70_RS06170 (AAVC70_06170) comQ 1000112..1000987 (-) 876 WP_013353397.1 polyprenyl synthetase family protein Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=894654 AAVC70_RS06145 WP_014472195.1 995495..996139(-) (comA) [Bacillus amyloliquefaciens strain Fad 97]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=894654 AAVC70_RS06145 WP_014472195.1 995495..996139(-) (comA) [Bacillus amyloliquefaciens strain Fad 97]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86