Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AAVB98_RS12035 Genome accession   NZ_CP154895
Coordinates   2299206..2301191 (+) Length   661 a.a.
NCBI ID   WP_013353757.1    Uniprot ID   A0A9P1NJ26
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2294206..2306191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS12020 (AAVB98_12020) - 2295353..2295922 (-) 570 WP_013353759.1 TetR/AcrR family transcriptional regulator -
  AAVB98_RS12025 (AAVB98_12025) - 2295994..2298495 (-) 2502 WP_014471081.1 PEP/pyruvate-binding domain-containing protein -
  AAVB98_RS12030 (AAVB98_12030) - 2298794..2299030 (+) 237 WP_003151438.1 CsbA family protein -
  AAVB98_RS12035 (AAVB98_12035) uvrB 2299206..2301191 (+) 1986 WP_013353757.1 excinuclease ABC subunit UvrB Machinery gene
  AAVB98_RS12040 (AAVB98_12040) uvrA 2301199..2304072 (+) 2874 WP_013353756.1 excinuclease ABC subunit UvrA Machinery gene
  AAVB98_RS12045 (AAVB98_12045) - 2304120..2304359 (-) 240 WP_014471080.1 hypothetical protein -
  AAVB98_RS12050 (AAVB98_12050) - 2304557..2304883 (+) 327 WP_025649342.1 hypothetical protein -
  AAVB98_RS12055 (AAVB98_12055) - 2304908..2306005 (+) 1098 WP_013353753.1 DUF4097 domain-containing protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76489.28 Da        Isoelectric Point: 5.2472

>NTDB_id=894558 AAVB98_RS12035 WP_013353757.1 2299206..2301191(+) (uvrB) [Bacillus amyloliquefaciens strain Fad 77]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITHSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=894558 AAVB98_RS12035 WP_013353757.1 2299206..2301191(+) (uvrB) [Bacillus amyloliquefaciens strain Fad 77]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGCGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATTTGATTA
AAGAAGTCAACAAGCCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTTCCGAACAACGCTGTCGAATACTTTGTCAGCTACTACGATTACTATCAGCCGGAGGCGTATGTGCCTCAGACGGATAC
ATTTATAGAGAAAGACGCAAGCATTAACGATGAAATTGATAAACTGAGACACTCCGCCACATCCTCTCTGTTTGAACGGA
GAGATGTCATTATTATCGCGAGTGTATCATGCATATACGGTCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGAAATGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGGGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGTGATGAAATTGAGCGGATCAGAGAGGTTGACGCTTTGACCGGAGAAATTCTCGGCGACCGCGATCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACACGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTAAAAGTCATGCGCGAAAACGGCAAGCTTCTGGAAGCCCAGCGCCTTGAGCAGCGTACGAGATATGATC
TTGAAATGATGCGGGAAATGGGTTTCTGCTCGGGGATCGAGAACTATTCAAGACACTTGACGCTCCGTCCTCCGGGCTCC
ACGCCGTATACGCTGCTTGATTATTTTCCGGATGATTTTATGATTGTCGTTGATGAATCACACGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCAAGAAAACAGGTGCTTGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTTCGATTCGAGGAATTTGAAAAGCACATGCACAATATCGTGTACGTCTCTGCTACCCCGGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGGCCGACGGGACTTCTCGATCCTCTCATTGATGTCCGTCCGAT
CGAAGGGCAGATTGATGATCTGATCGGTGAGATTCAGGCGAGGATTGAACGTAATGAACGCGTGCTCGTGACGACTTTAA
CAAAAAAAATGTCAGAGGACCTGACCGATTATCTGAAGGAAATCGGTATCAAGGTCAATTATCTTCATTCAGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGACCTCCGCCTCGGGAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTGGATGCGGATAAAGAAGGCTTCCTTCGTTCCGAGCGGTCGC
TGATTCAGACGATCGGACGGGCGGCCCGGAACGCAGAGGGACGCGTCATCATGTATGCCGATAAAATCACGCATTCGATG
GAAATTGCGATTAATGAAACGAAGCGCCGGCGGGAACAGCAGGAGCGCTTTAACGAAATCCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCTC
CTAAGCTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAACGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTAAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(12-130)

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB/uvrC motif (UVR)

(626-659)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJ26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699